PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_440V3.2.p
Common NamePHYPADRAFT_171319
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 661aa    MW: 72331.6 Da    PI: 6.0056
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_440V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081150169120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       y+C++C++ Fs+  +L+ H 
  Pp3c21_440V3.2.p 150 YRCGICNEEFSSAKSLNFHK 169
                       9******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.38E-8149172No hitNo description
SMARTSM0035512150171IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.38E-8215242No hitNo description
SMARTSM003550.029220242IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827220247IPR007087Zinc finger, C2H2
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
PfamPF139121.8E-6222244IPR007087Zinc finger, C2H2
SMARTSM003550.61458480IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93458485IPR007087Zinc finger, C2H2
SuperFamilySSF576679.83E-7458480No hitNo description
PfamPF139122.6E-8458482IPR007087Zinc finger, C2H2
PROSITE patternPS000280460480IPR007087Zinc finger, C2H2
SuperFamilySSF576679.83E-7553580No hitNo description
SMARTSM003550.43558580IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307558582IPR007087Zinc finger, C2H2
PfamPF139121.0E-12558582IPR007087Zinc finger, C2H2
PROSITE patternPS000280560580IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MDIDQPGEGD ISVVVKGELG EVIERESGTE DYYLKAEVSS SRGNASNTNH STHEGSLDHP  60
LSRLRRSDAL CSRIRRVSTA KTRSSSLTSQ RSSAKLDPHT GATPDLKVDK DARGIRKRVE  120
DREELRRSSS SEELHGDEDG DGDEVDATQY RCGICNEEFS SAKSLNFHKC HPQYTLRRNP  180
KRSRKLIDQE VGKEAGAVTT IVQVSAITKK TSSMTEDFPK SCTECGKEFL SWKALFGHMR  240
CHPEREWRGI QPPAEESNAR GQGSGGNHSS SRRRRPAPVL HVHPPPAPAR EDNVEISASL  300
NSRRVTHVWS KASDDESDTE SIEAAYMSNG DRDMGYGTTW STRSKRSRQT HRSLDAVSNA  360
KKEWVPSSQG NIAAESTDMA ETLMLLQCNP NMEKLVLMST PESHGSKSRT PEFGVESETE  420
DVNLRDAKTE AASPCEDTEE CVDEFEAGEQ GTSTRPKYEC ATCKRQFKSH QALGGHRASH  480
KKVKGCFART NPDDGGALDH SMDTSMDADD DSEQHNAKFE EKLLQELPET SLTSLEEDKA  540
IRADNEEMPT TARKNKSHEC SICHRVFNSG QALGGHKRCH WGGGGAAGEV TSAKAVQGQG  600
VQGGQPSRPV KEAVLDLNLP APEYLEEMMA QGEAEAGSLQ LLNYLPAAAA ASLSLHPVYA  660
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358652.10.0uncharacterized protein LOC112273868 isoform X1
TrEMBLA0A2K1IQ910.0A0A2K1IQ91_PHYPA; Uncharacterized protein
STRINGPP1S286_28V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-16C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]