PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_440V3.1.p
Common NamePHYPADRAFT_171319
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 761aa    MW: 82854.9 Da    PI: 5.3081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_440V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00095250269120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       y+C++C++ Fs+  +L+ H 
  Pp3c21_440V3.1.p 250 YRCGICNEEFSSAKSLNFHK 269
                       9******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-7249272No hitNo description
SMARTSM0035512250271IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.02E-7315342No hitNo description
PROSITE profilePS501579.827320347IPR007087Zinc finger, C2H2
SMARTSM003550.029320342IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-6322344IPR007087Zinc finger, C2H2
PROSITE patternPS000280322342IPR007087Zinc finger, C2H2
PfamPF139123.1E-8558582IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-6558580No hitNo description
PROSITE profilePS501579.93558585IPR007087Zinc finger, C2H2
SMARTSM003550.61558580IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280560580IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-6653680No hitNo description
PfamPF139121.2E-12658682IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307658682IPR007087Zinc finger, C2H2
SMARTSM003550.43658680IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280660680IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MKDQLAGGER GREIERAERS GSTSMIDGSE CVERAGTELD WEGRATDQVK RSADQERGMD  60
LEGEDMERGA SSVADNACKS GVSGGKKTED DNLGGSAVDG MDIDQPGEGD ISVVVKGELG  120
EVIERESGTE DYYLKAEVSS SRGNASNTNH STHEGSLDHP LSRLRRSDAL CSRIRRVSTA  180
KTRSSSLTSQ RSSAKLDPHT GATPDLKVDK DARGIRKRVE DREELRRSSS SEELHGDEDG  240
DGDEVDATQY RCGICNEEFS SAKSLNFHKC HPQYTLRRNP KRSRKLIDQE VGKEAGAVTT  300
IVQVSAITKK TSSMTEDFPK SCTECGKEFL SWKALFGHMR CHPEREWRGI QPPAEESNAR  360
GQGSGGNHSS SRRRRPAPVL HVHPPPAPAR EDNVEISASL NSRRVTHVWS KASDDESDTE  420
SIEAAYMSNG DRDMGYGTTW STRSKRSRQT HRSLDAVSNA KKEWVPSSQG NIAAESTDMA  480
ETLMLLQCNP NMEKLVLMST PESHGSKSRT PEFGVESETE DVNLRDAKTE AASPCEDTEE  540
CVDEFEAGEQ GTSTRPKYEC ATCKRQFKSH QALGGHRASH KKVKGCFART NPDDGGALDH  600
SMDTSMDADD DSEQHNAKFE EKLLQELPET SLTSLEEDKA IRADNEEMPT TARKNKSHEC  660
SICHRVFNSG QALGGHKRCH WGGGGAAGEV TSAKAVQGQG VQGGQPSRPV KEAVLDLNLP  720
APEYLEEMMA QGEAEAGSLQ LLNYLPAAAA ASLSLHPVYA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358652.10.0uncharacterized protein LOC112273868 isoform X1
TrEMBLA0A2K1IQ910.0A0A2K1IQ91_PHYPA; Uncharacterized protein
STRINGPP1S286_28V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-16C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]