PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 480aa MW: 52334.5 Da PI: 6.9931

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c21_2850V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.8	2.8e-34	51	105	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl Pp3c21_2850V3.1.p 51 KPRLRWTPELHERFVDAVTQLGGADKATPKSVMRIMGVKGLTLYHLKSHLQKYRL 105 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.403	48	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-33	48	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.02E-17	51	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-24	51	106	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-8	53	104	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-20	147	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MFPMKKYMSP GTFQQRPRST GSLYIPEKLQ SPYGSVMNGG DMVPLSPADP KPRLRWTPEL 60 HERFVDAVTQ LGGADKATPK SVMRIMGVKG LTLYHLKSHL QKYRLGKQLT RDQHFHNKDG 120 NSDLQRSNSL SDGGMAQKSQ NMQHGLQMSE AIQLQLEVQQ RLQDQLEVQR HLQMRIEAQG 180 KYLQAILQKA KETLASHTSE SPGLEAAHAE LTELASKVTT VGYLSDFSNL GMPPMAQPDP 240 LMALHELPRQ PSRNSDTSSQ KSFLTNLTGN AEDSGAVSGS GEPRGLTEDE DGVGQESSAQ 300 FHEEMSANRL HPQGSGNSRG FQGGLAHAAT TTALAGVVPS SSSHCNPITS FWHMNSFQNM 360 TSSPMSGSLC EVVQDYRTDN SNPNQLANSL IMERLSSSQG VGIHHLSGMH HTQNGLGFMH 420 GGSTSASYTS LQDLYCSSGD TLRGGLVKAE MNLAERNHII QCRGSELDLN SGWERYISS*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MFPMKKYMSP GTFQQRPRST GSLYIPEKLQ SPYGSVMNGG DMVPLSPADP KPRLRWTPEL  60
HERFVDAVTQ LGGADKATPK SVMRIMGVKG LTLYHLKSHL QKYRLGKQLT RDQHFHNKDG  120
NSDLQRSNSL SDGGMAQKSQ NMQHGLQMSE AIQLQLEVQQ RLQDQLEVQR HLQMRIEAQG  180
KYLQAILQKA KETLASHTSE SPGLEAAHAE LTELASKVTT VGYLSDFSNL GMPPMAQPDP  240
LMALHELPRQ PSRNSDTSSQ KSFLTNLTGN AEDSGAVSGS GEPRGLTEDE DGVGQESSAQ  300
FHEEMSANRL HPQGSGNSRG FQGGLAHAAT TTALAGVVPS SSSHCNPITS FWHMNSFQNM  360
TSSPMSGSLC EVVQDYRTDN SNPNQLANSL IMERLSSSQG VGIHHLSGMH HTQNGLGFMH  420
GGSTSASYTS LQDLYCSSGD TLRGGLVKAE MNLAERNHII QCRGSELDLN SGWERYISS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024358799.1	0.0	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024358800.1	0.0	protein PHR1-LIKE 2-like isoform X1
Swissprot	Q94A57	4e-66	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2K1IQI6	0.0	A0A2K1IQI6_PHYPA; Uncharacterized protein
STRING	PP1S27_9V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	7e-61	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c21_2850V3.1.p
Entrez Gene	5920553

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]