PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_21070V3.3.p | ||||||||
Common Name | PHYPADRAFT_89183 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22836.8 Da PI: 10.0697 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.5 | 7.6e-14 | 106 | 148 | 2 | 47 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 ++GVr ++ ++Wv eIr s ++++++lg++ t+eeAa+a++ Pp3c21_21070V3.3.p 106 NFRGVRHRPELNKWVTEIRPTS---QKRKIWLGTYETPEEAARAYD 148 58***************99942...35******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.21E-17 | 105 | 152 | No hit | No description |
SMART | SM00380 | 2.8E-14 | 106 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.857 | 106 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-19 | 106 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.3E-10 | 106 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-13 | 107 | 162 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MNLTISSIIE QGKPKAKNCW DPCGGGKIRE QGLQLSSSIG TSRVKIELEG SKSDSSVEEE 60 SKGMRLAAKD TSGRNAYKYR NIDLNKAPST WDADEVTVSS TNDTTNFRGV RHRPELNKWV 120 TEIRPTSQKR KIWLGTYETP EEAARAYDVG IFYTKKKIPY NFEDSPKKLQ QLPIPPELPW 180 ESFAAVVKQR ATSAAKRARV PSSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11756 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359372.1 | 1e-150 | ethylene-responsive transcription factor ERF039-like | ||||
Refseq | XP_024359373.1 | 1e-150 | ethylene-responsive transcription factor ERF039-like | ||||
Refseq | XP_024359375.1 | 1e-150 | ethylene-responsive transcription factor ERF039-like | ||||
Refseq | XP_024359376.1 | 1e-150 | ethylene-responsive transcription factor ERF039-like | ||||
Refseq | XP_024359377.1 | 1e-150 | ethylene-responsive transcription factor ERF039-like | ||||
Refseq | XP_024359378.1 | 1e-150 | ethylene-responsive transcription factor ERF039-like | ||||
TrEMBL | A0A2K1ISV0 | 1e-148 | A0A2K1ISV0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S179_56V6.1 | 1e-149 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 2e-13 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_21070V3.3.p |
Entrez Gene | 5937825 |
Publications ? help Back to Top | |||
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