PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_18820V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HSF | ||||||||
Protein Properties | Length: 427aa MW: 47332.5 Da PI: 7.5229 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113 | 2e-35 | 26 | 117 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d+++++++sw e+g++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv e+ weF++++F++g+++ Pp3c21_18820V3.4.p 26 FLTKTYHLVNDPATNDIVSWGEDGTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANDYFRRGERH 107 9****************************************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i+r+k Pp3c21_18820V3.4.p 108 LLCEIHRRKA 117 *******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.1E-38 | 19 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.2E-61 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.74E-34 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.2E-19 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.9E-32 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-19 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-19 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MSLAFDNSET GCMLFYDCHR SVPAPFLTKT YHLVNDPATN DIVSWGEDGT TFVVWRPPEF 60 ARDLLPNYFK HNNFSSFVRQ LNTYGFRKVV PERWEFANDY FRRGERHLLC EIHRRKALQP 120 ASGTGSAQQS RSLSPSTSIE DQAWSPISSP MSSPLPISVP TQHPTLPVMS ISDENERLRK 180 DNNLLLCEVS RLRRLYEETV SIIHQQYKAT PTDFSALTSS LAGVEYSLIK SFGVGASGQS 240 LETAGSVTAL SGDAASQHRS LNPISRGDFE IPELSVHVRT TNHNFCKTIS PPTFPERAPN 300 AVFINPGNPK FPTGPKLTAS AESLNSSNKL VKLFGVPLHS QVAISEPATI RREPAAVAST 360 GLKRRQSDSP WDPVCEISDM DAPLCDQVFV RPPPRKCLRP ESEPRPSPVQ PPWLLICATR 420 DEGVYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 9e-23 | 22 | 115 | 7 | 110 | Heat shock factor protein 1 |
5hdn_A | 9e-23 | 22 | 115 | 7 | 110 | Heat shock factor protein 1 |
5hdn_B | 9e-23 | 22 | 115 | 7 | 110 | Heat shock factor protein 1 |
5hdn_C | 9e-23 | 22 | 115 | 7 | 110 | Heat shock factor protein 1 |
5hdn_D | 9e-23 | 22 | 115 | 7 | 110 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359690.1 | 0.0 | heat stress transcription factor B-4-like isoform X1 | ||||
Swissprot | Q9C635 | 1e-68 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A2K1ISJ5 | 0.0 | A0A2K1ISJ5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S85_27V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-66 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_18820V3.4.p |