PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_16260V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 394aa MW: 44392.2 Da PI: 9.7505 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.1 | 8e-19 | 131 | 218 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k++++s+v++ +l lp +f+++h+ e+ tlede+g++We + rk++ l++GW++F +++L +gD ++F+l++ +f Pp3c21_16260V3.1.p 131 FVKAMLHSHVSSCFWLGLPHHFCKKHMPY--EDERFTLEDEDGKEWECLYLARKTG----LSGGWRGFSLDHDLVDGDCCIFELVRPLRF- 214 89************************633..4457***************656665....***********************9885555. PP .EEEE CS B3 92 lvvkv 96 ++ + Pp3c21_16260V3.1.p 215 -KIYF 218 .5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-21 | 127 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-26 | 127 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.23E-28 | 129 | 220 | No hit | No description |
PROSITE profile | PS50863 | 13.31 | 131 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.6E-24 | 131 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-16 | 131 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MAVDKKAPAL SYEEERKQRV MENKRIMQEL GLVDLSNELK KLKKDSAKKP VKRKMLVQDV 60 AGLESRRSSR VAAKPAVSYR DQLDLLPGFR ARSGTGGERQ GLPRRYLSDT VRLATIEMAE 120 EAFKAIKNPG FVKAMLHSHV SSCFWLGLPH HFCKKHMPYE DERFTLEDED GKEWECLYLA 180 RKTGLSGGWR GFSLDHDLVD GDCCIFELVR PLRFKIYFFR CSEQEDRAED VEEKRSAVKA 240 ESKKAMTEKK ASKAVTKKKP GFFEARKSNK SASKKLEVTD EEDDEYQSPK RSVNHDDSYV 300 VVASRASSRK RVEHEDDVGK CLTPPRKHYK GTKSNHLKGN QADNPIDQES VQNEVDEKGS 360 GESAAVTKTN QAGLGLSSGR VTRNSSRRSL GTS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 54 | KKPVKRKM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358852.1 | 0.0 | B3 domain-containing protein Os06g0194400-like | ||||
TrEMBL | A0A2K1ISA4 | 0.0 | A0A2K1ISA4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S167_8V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-41 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_16260V3.1.p |