PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_15150V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 600aa    MW: 66938.2 Da    PI: 7.9969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_15150V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.5e-16391438355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++h  +ErrRR+++N++f  Lrel+P+       K++Ka+iL  A+eY+k+Lq
  Pp3c21_15150V3.6.p 391 ASHVLAERRRREKLNDRFVALRELIPNV-----SKMDKASILGVAIEYVKELQ 438
                         68999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-4820203IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.97E-20386450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-16386442No hitNo description
PROSITE profilePS5088817.879388437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-13391438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-20392449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18394443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MSGSKLEAIK EMTPLVPPEL RLELQAATRA VKWTYSVFWK PASSNQKTLV WGDGYYNGTI  60
KTRKTIGAKE LTPEEFGLQR SQQLRDLYNS LSDSKTGHQQ ASKPFALKPE DLAEQEWFFL  120
LCMSCNFAEG VGLVGRAAAD GRYAWQCKTN EISTKLFTRA LLAKSASIQT IFCFPLMDGV  180
VEFGTTEHVP EDSNIVQHVS SFFMERKRHS HPQHSVTTEQ KHEHSKNSPQ QSENVVHCNQ  240
LAEYGASSKK AKLSSSQMAE VENETSMNRV NSLLDPTSQE QRTYTHLFQQ NQGSDSRLYK  300
GENRGKNQSG VLPGRVFSSW KKNSTPSQKS QKAENRQKIL KEALFRVTRL YDGAWKNKVD  360
SSFIFTDRAV EDRTSNLGSQ KPVPSSEETS ASHVLAERRR REKLNDRFVA LRELIPNVSK  420
MDKASILGVA IEYVKELQSQ LRALESNNTQ DGTPRQFGTA NEDATITNTT REHLECAGVV  480
HVIDEDKAAT SECTITEESF KPGHVNVRVS MNNDVAIVKL HCPYRQTLLV DVLQSLNDLE  540
FDVCGVRSSI SDDILSTVLE AKLRSASDGS SPTIIEVEKT LHRAAAGLLK ERASASSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-172120312192Transcription factor MYC3
4rqw_B1e-172120312192Transcription factor MYC3
4rs9_A1e-172120312192Transcription factor MYC3
4yz6_A1e-172120312192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1396401ERRRRE
2397402RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.106370.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359281.10.0transcription factor TT8-like isoform X1
RefseqXP_024359283.10.0transcription factor TT8-like isoform X1
RefseqXP_024359284.10.0transcription factor TT8-like isoform X1
RefseqXP_024359285.10.0transcription factor TT8-like isoform X1
RefseqXP_024359286.10.0transcription factor TT8-like isoform X1
RefseqXP_024359287.10.0transcription factor TT8-like isoform X1
TrEMBLA0A2K1IS250.0A0A2K1IS25_PHYPA; Uncharacterized protein
STRINGPP1S167_124V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.37e-57bHLH family protein