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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_15150V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 600aa MW: 66938.2 Da PI: 7.9969 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50 | 5.5e-16 | 391 | 438 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h +ErrRR+++N++f Lrel+P+ K++Ka+iL A+eY+k+Lq Pp3c21_15150V3.5.p 391 ASHVLAERRRREKLNDRFVALRELIPNV-----SKMDKASILGVAIEYVKELQ 438 68999**********************6.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.6E-48 | 20 | 203 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 4.97E-20 | 386 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.43E-16 | 386 | 442 | No hit | No description |
PROSITE profile | PS50888 | 17.879 | 388 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-13 | 391 | 438 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-20 | 392 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-18 | 394 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MSGSKLEAIK EMTPLVPPEL RLELQAATRA VKWTYSVFWK PASSNQKTLV WGDGYYNGTI 60 KTRKTIGAKE LTPEEFGLQR SQQLRDLYNS LSDSKTGHQQ ASKPFALKPE DLAEQEWFFL 120 LCMSCNFAEG VGLVGRAAAD GRYAWQCKTN EISTKLFTRA LLAKSASIQT IFCFPLMDGV 180 VEFGTTEHVP EDSNIVQHVS SFFMERKRHS HPQHSVTTEQ KHEHSKNSPQ QSENVVHCNQ 240 LAEYGASSKK AKLSSSQMAE VENETSMNRV NSLLDPTSQE QRTYTHLFQQ NQGSDSRLYK 300 GENRGKNQSG VLPGRVFSSW KKNSTPSQKS QKAENRQKIL KEALFRVTRL YDGAWKNKVD 360 SSFIFTDRAV EDRTSNLGSQ KPVPSSEETS ASHVLAERRR REKLNDRFVA LRELIPNVSK 420 MDKASILGVA IEYVKELQSQ LRALESNNTQ DGTPRQFGTA NEDATITNTT REHLECAGVV 480 HVIDEDKAAT SECTITEESF KPGHVNVRVS MNNDVAIVKL HCPYRQTLLV DVLQSLNDLE 540 FDVCGVRSSI SDDILSTVLE AKLRSASDGS SPTIIEVEKT LHRAAAGLLK ERASASSLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-17 | 21 | 203 | 12 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-17 | 21 | 203 | 12 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-17 | 21 | 203 | 12 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-17 | 21 | 203 | 12 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 396 | 401 | ERRRRE |
2 | 397 | 402 | RRRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10637 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359281.1 | 0.0 | transcription factor TT8-like isoform X1 | ||||
Refseq | XP_024359283.1 | 0.0 | transcription factor TT8-like isoform X1 | ||||
Refseq | XP_024359284.1 | 0.0 | transcription factor TT8-like isoform X1 | ||||
Refseq | XP_024359285.1 | 0.0 | transcription factor TT8-like isoform X1 | ||||
Refseq | XP_024359286.1 | 0.0 | transcription factor TT8-like isoform X1 | ||||
Refseq | XP_024359287.1 | 0.0 | transcription factor TT8-like isoform X1 | ||||
TrEMBL | A0A2K1IS25 | 0.0 | A0A2K1IS25_PHYPA; Uncharacterized protein | ||||
STRING | PP1S167_124V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 7e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_15150V3.5.p |