PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_14114V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 332aa    MW: 36453.6 Da    PI: 4.742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_14114V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.3e-08263308655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR  i +++ +L++l+P       k  + a++L ++++Y+ sLq
  Pp3c21_14114V3.5.p 263 SIAERVRRTGISERMKKLQDLVPGM----EKTTNTATMLDETMDYVMSLQ 308
                         689*********************7....366****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.855257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-14260323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.60E-9261311No hitNo description
Gene3DG3DSA:4.10.280.103.0E-14262324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5263308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLNYSPGIGH ISAPGVGLQR YHSAPGAFLQ AAADDAFSQI PLPLENSDVD SAFGDCGLPP  60
ITEQTDMEQM DSGNSMVEFE QFLPLDSDFS ERAAMSALGV AKSENVDTFA SFFPPAKETR  120
SVREKRVSIA EKIIPNQEII TISEDHHSED SISGTSEVNS LRNGFNVAMY SQDDFFRTDT  180
MTSMPTSQGG KRQRGFAGEY TTSNDSELNF KSFRLGINQS TGFIRHASFP TSGEGVNMDS  240
NPDDRYVQMR LRAKRGCATH PRSIAERVRR TGISERMKKL QDLVPGMEKT TNTATMLDET  300
MDYVMSLQNK VTELQESIVQ LKPGATLINS S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358971.10.0transcription factor bHLH130-like isoform X2
RefseqXP_024358973.10.0transcription factor bHLH130-like isoform X2
TrEMBLA0A2K1IRW40.0A0A2K1IRW4_PHYPA; Uncharacterized protein
STRINGPP1S132_152V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-27bHLH family protein