PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c21_1210V3.2.p | ||||||||
Common Name | PHYPADRAFT_90023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 560aa MW: 60872.3 Da PI: 7.3974 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 267 | 291 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kC+ C+k+F+++ ++k H +tH Pp3c21_1210V3.2.p 267 FKCQheGCNKTFKNPQTMKMHHKTH 291 89**********************9 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 322 | 340 | 2 | 20 |
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +Cp+C+k+F ++L+rH Pp3c21_1210V3.2.p 322 RCPKCKKTFVGLYELRRHF 340 7*****************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.1E-7 | 263 | 292 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-9 | 265 | 294 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.887 | 267 | 296 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0027 | 267 | 291 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 269 | 291 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.5E-7 | 321 | 371 | No hit | No description |
PROSITE profile | PS50157 | 9.224 | 321 | 350 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 321 | 344 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.6E-4 | 322 | 356 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 323 | 344 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 180 | 351 | 371 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 210 | 377 | 398 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 560 aa Download sequence Send to blast |
MAVTATPALS TFYGTEAANI LQPLTFSGNH GLMANDVVPL SLGSMLTMGG TSLYNYGDNA 60 AFASPWDSYF TRDSSIFNLP NTLSPSLSFS DSSVYSTEES DLLLLNSDSD DFFQQIHGCS 120 PISATSSISA SSSISTMHPN LVNTLKNMVA PGSAGSSVAQ GVSIFGDAQA PLLDRQLLPQ 180 VQVENHLQDR SQLDSIYGFR NALPRQSQQS VVVPKVELQD LPSSVGVVVS TPADSNLDSV 240 KAVEKSESED IEAAVVSVDL IQNRRPFKCQ HEGCNKTFKN PQTMKMHHKT HYSDGSAASK 300 TCTLPTLTSS LKAGHNKKIP SRCPKCKKTF VGLYELRRHF GRKHSEGEKP FGCRKCGKKF 360 YIEVDVRDHE KLCGEPIECK CGLKFAFKCN LVAHKKAHPA CQDQQPNCSS STTSNNQSSS 420 DDSDHSPGIS RYSQTSGIKR AREESTSPIQ SSLHVPVPDF TGIPDAPLFK TARHAFPGSS 480 FHSETSPLWT SNMLYPPISF SNLPLPSAYT NLDCLQDRLR FNPQHFSTKS LPIPSTYAEA 540 VNCEMGIAHN QLPFKAWSG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358686.1 | 0.0 | zinc finger protein 184-like | ||||
TrEMBL | A9TA08 | 0.0 | A9TA08_PHYPA; Predicted protein | ||||
STRING | PP1S191_100V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51220.1 | 2e-13 | WIP domain protein 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c21_1210V3.2.p |
Entrez Gene | 5938639 |
Publications ? help Back to Top | |||
---|---|---|---|
|