PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_10320V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TALE
Protein Properties Length: 509aa    MW: 57539.1 Da    PI: 5.6994
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_10320V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.3e-074334801054
                         HHHHHHHHHHHH...SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  10 eqleeLeelFek...nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +   +L++ F++    +yps+ e++ L k +gL+ +q+ +WF N R +
  Pp3c21_10320V3.1.p 433 SARSILKDWFNRhsyWPYPSEMEKQYLQKLCGLNLKQINNWFINERKR 480
                         567889999996334589****************************88 PP
2ELK29.41.8e-10401422122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         E+K++L++KY+ ++g Lk+EF+
  Pp3c21_10320V3.1.p 401 EIKKALRKKYGRHIGELKAEFN 422
                         89*******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.1E-15243287IPR005540KNOX1
PfamPF037901.0E-13245286IPR005540KNOX1
SMARTSM012562.6E-20292343IPR005541KNOX2
PfamPF037911.7E-18295342IPR005541KNOX2
PROSITE profilePS512139.952401421IPR005539ELK domain
SMARTSM011881.6E-4401422IPR005539ELK domain
PfamPF037891.3E-6401422IPR005539ELK domain
PROSITE profilePS5007111.499421484IPR001356Homeobox domain
SMARTSM003893.1E-9423488IPR001356Homeobox domain
SuperFamilySSF466891.15E-16425491IPR009057Homeodomain-like
CDDcd000866.85E-12425482No hitNo description
Gene3DG3DSA:1.10.10.608.1E-24426483IPR009057Homeodomain-like
PfamPF059206.7E-15441480IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MARSSDRESV GKLVTLQQPG HRDPRFFDAA DSMMRDFWSH TADRESRQAE ILRGSGWAPS  60
AHQLEEHPSF RLETASVNMG DALSSLITSH NVYFECSQPN YLDNTSSSSS QANAYTNFFN  120
TTGCFPSDHN PVAVTQMSYV TTEIHDEGRY LSLPPRIATN GNFSTGTCSR VNVQSEGSIN  180
RDMELFRREI AFKCPKSSDL LLAITTSADA AVREHGSGSA GSAHSSDSEE VPDVQGLESE  240
QVPELRAAII DHPFYPEMVL AHVRVFKIGA PRRLINKLDD LTRKFQQYQN CDTLKIGTDP  300
ALDHFMRSYV DMLTKFAEDL EEPFNKFMQF KDSTTKALEG ICGHYVETTP DEDDNNGFDI  360
GPMEYGAQAS DDLYLPADEN LMYPLDIDES VVVDPMASDE EIKKALRKKY GRHIGELKAE  420
FNRVRKKGKL PSSARSILKD WFNRHSYWPY PSEMEKQYLQ KLCGLNLKQI NNWFINERKR  480
HWSCEGKCMH PNTKFYSNAN GQCNGHLE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2667470.0AB266747.1 Physcomitrella patens MKN5 gene for knotted-like homeobox transcription factor MKN5, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1IRF40.0A0A2K1IRF4_PHYPA; Uncharacterized protein
STRINGPP1S235_27V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.16e-43KNOTTED-like from Arabidopsis thaliana 2