PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_9330V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 322aa MW: 35457.8 Da PI: 8.3738 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137 | 6.7e-43 | 13 | 113 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rr+C++dC+l+pyfp +qpk+f+nvhklFG+sn+l++lk++++++red+++s++yeA+ r +dPv+G++gvi+ lq+q+++lk Pp3c20_9330V3.2.p 13 ACAACKYQRRRCTPDCPLSPYFPPDQPKRFQNVHKLFGVSNILRILKHVDPSKREDTVKSIAYEADTREKDPVHGCLGVITILQNQVSKLKD 104 7******************************************************************************************* PP DUF260 93 elallkeel 101 ela+++e+l Pp3c20_9330V3.2.p 105 ELAVAREQL 113 ****99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.474 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-41 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MTGSSSSGGT NTACAACKYQ RRRCTPDCPL SPYFPPDQPK RFQNVHKLFG VSNILRILKH 60 VDPSKREDTV KSIAYEADTR EKDPVHGCLG VITILQNQVS KLKDELAVAR EQLYLLQQHH 120 NFNQQAQIQQ IVGSLGGNTT VVNVSSGHDN NVLMHQLQQF NELNQLSSDF VKSNPLPGSS 180 FEPDQYLRND GFEQLKPGSA LTTRFDVGRY IPGESLVQQS VLLGQVKLKE QSEQQRGHYG 240 IAGAGSSFIP TPCGDHNLLQ DVDRAFGTPD QYAMAIRRRG SNLLNLTVAS EAELRRATGG 300 HHGVPKHELR SAVVYLTLTN N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-39 | 3 | 147 | 1 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-39 | 3 | 147 | 1 | 131 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024357789.1 | 0.0 | LOB domain-containing protein 22-like isoform X1 | ||||
Refseq | XP_024357790.1 | 0.0 | LOB domain-containing protein 22-like isoform X1 | ||||
TrEMBL | A0A2K1IUQ9 | 0.0 | A0A2K1IUQ9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S9_450V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-41 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_9330V3.2.p |