PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_9210V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CPP
Protein Properties Length: 630aa    MW: 67213 Da    PI: 7.7613
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_9210V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR38.22.8e-12153193142
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                        k++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  Pp3c20_9210V3.5.p 153 KKCKQCNCKNSRCLKLYCECFASGTYCEG-CNCVNCCNNVEN 193
                        589*************************9.********9875 PP
2TCR51.42.2e-16237275139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN 
  Pp3c20_9210V3.5.p 237 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCVDCKNF 275
                        589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.4E-13153193IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.845154277IPR005172CRC domain
PfamPF036381.8E-8156190IPR005172CRC domain
SMARTSM011141.0E-19237278IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.9E-13240275IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MGDALKSTVM EVSDTSATAA SDLHESPPAP TAAPGSVAAG SQPPAALEAF SQQVKSQPLA  60
FTPASPVMPR PVLRSMDVDP SHVIMAVSTP SQTSQVGDHP TRKAVPRQLD FTTMYGGPVG  120
LADNSVRTPQ PSLKHESPRQ RSRSFDAKDG TPKKCKQCNC KNSRCLKLYC ECFASGTYCE  180
GCNCVNCCNN VENEIVRQEA VEATLERNPN AFRPKIFSSP GIRDSGEDVG EHPLAGKHNK  240
GCHCKKSGCL KKYCECFQAN ILCSENCKCV DCKNFDGSEE RRALFQADHN MSVNFMQPLG  300
GSGVLSNSPA YLSPSPLLKK RRTHELVFSG PGLKEQVSVK RTPSLPLQLT SGGGTAPSLS  360
LALSSTIAST PSSQGVSPAV PPAKPMHKSL LAGVVQIEAI HELCKLLVVV SSETQKEILA  420
KHSLSHTTKI INSETDASLE PAPTAWTVDE RNHGQKAEKL FSDRAVTTTG PDDEDADKPQ  480
RPMSPGTLAL MCDEKEPLFT APPSPIGGLA SEELSTSGSP QIALLHAEQE RAILLEFRDC  540
LRRITSVGNR RASRYSNEIT HSEMYVLASG QLNQQEGGAL RSTRPIVSPG EHGSPSAVGT  600
SSSCTIAFKP SNLGLRLRSP EGPPTRVSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2815628612132Protein lin-54 homolog
5fd3_B2e-2815628612132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319323KRRTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356887.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A2K1IUN80.0A0A2K1IUN8_PHYPA; Uncharacterized protein
STRINGPP1S9_436V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-93Tesmin/TSO1-like CXC domain-containing protein