PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_7710V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 276aa MW: 30755.5 Da PI: 7.3685 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.1 | 6.4e-43 | 16 | 116 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkC++dC+l+pyfp +qpk+fanvh+lFG+s +l+llk++++++r+d+++s++yeA+ r +dPv+G++gvi+ lq+q+++lk+ Pp3c20_7710V3.2.p 16 ACAACKYQRRKCTPDCPLSPYFPPDQPKRFANVHRLFGVSSILRLLKHVDPSKRDDTVKSITYEADTREKDPVHGCLGVITMLQNQVSKLKE 107 7******************************************************************************************* PP DUF260 93 elallkeel 101 el+ ++++l Pp3c20_7710V3.2.p 108 ELNIARQQL 116 *****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.228 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-41 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGVQQKASSS NTTNTACAAC KYQRRKCTPD CPLSPYFPPD QPKRFANVHR LFGVSSILRL 60 LKHVDPSKRD DTVKSITYEA DTREKDPVHG CLGVITMLQN QVSKLKEELN IARQQLLMME 120 QQQAMAVAGQ QLQSFQSPHG LLVESGYEDY DSQLLRYHIG GHEVDKFDQK LNILPLDYRY 180 GGEDTHLMNL TKADQAEQHR RTGACFGIDP ESHRQTHSQA THDQSSRSST SISPAGYGII 240 PDADIKGANY LLSSGQCHVL DHELRRAGVY LSLTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 7 | 117 | 2 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 7 | 117 | 2 | 112 | LOB family transfactor Ramosa2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024357736.1 | 0.0 | LOB domain-containing protein 6-like | ||||
Refseq | XP_024357737.1 | 0.0 | LOB domain-containing protein 6-like | ||||
TrEMBL | A0A2K1IUI6 | 0.0 | A0A2K1IUI6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S9_303V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-41 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_7710V3.2.p |