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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pp3c20_3770V3.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family |
ERF |
Protein Properties |
Length: 536aa MW: 57268.4 Da PI: 5.8618 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pp3c20_3770V3.1.p | genome | COSMOSS | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 66.3 | 6.1e-21 | 223 | 273 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a++aa+ kl+ge
Pp3c20_3770V3.1.p 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDAAAYKLRGE 273
59******9.**********955...5**************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 536 aa
Download sequence Send
to blast |
MAAVAHYDMS DMLLGQEVSY SGSYYGGNGV HDGGGVSTFN PDISILEGCR QSAILPSNSS 60 SNFCAPSQCF NRGELSPHEG KLSVTSLGMP FTPGSAALLK DQIPIWSEYK SSILVSPQFP 120 PTYGSERVGM YQQPGVQDLS NGVALAGDAS HLQQLHQLSG NYPQVSQLPP QQLYQVQGFS 180 PPLPEIDLQN LPRTWSPLAD LGPRAHVMKK TAEKRIGVPR TKLYRGVRQR HWGKWVAEIR 240 LPRNRTRLWL GTFDTAEEAA LAYDAAAYKL RGEYARLNFP RQQDDKGVAG VAQTTVGVPS 300 ALFNRGFSST LGAKLKEIAY QKALQANVAG GDSSTCHPPT QPEDKTGLRE PTQQAAFSGQ 360 AENLSVPSVS GLEHFSFRES GSSTSTSPCQ SPPEASSGSE SRYVSSPGSD ATGESSEDLL 420 SGFDLDGLLL GSVPSSEEQV DWSWDVFGLK GCQSSAEASV DSASSPSSSS SSSSSSSLVQ 480 ANIAQQQQQQ NGSATQFVTP STINNIAVES TPKKLTTITT PTLSPRRFNV WRSCE*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gcc_A | 3e-20 | 222 | 280 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |