PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_18730V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 466aa MW: 53220.6 Da PI: 8.9223 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3e-05 | 246 | 270 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +C+ C+k F+++ +L+rH + H Pp3c20_18730V3.2.p 246 VCKiaECNKAFKSSKTLRRHVQQkH 270 79999***************98766 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00019 | 319 | 339 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp C F r+++++rH r + Pp3c20_18730V3.2.p 319 CPFCQIKFARQHEMERHRRIC 339 *******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.45 | 245 | 275 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0045 | 245 | 270 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 246 | 267 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 247 | 270 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 33 | 317 | 337 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.4E-4 | 319 | 341 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MNGLKLVLPQ VEDSYSYLMK AASQALPWCS GLRSEVAKKW QFMLNKFGTQ AEAGCKDTAE 60 IFAEGGVLVV RSQSCPWSSA NIHHTNQCIA SDASQFYHIL ENSFYCDTTH ADRQDLRCKY 120 CATLENELTN SKEMNKWKWA GESCEDANVK QANRYFEPGT TMPLIDHDNQ KQKYGQDEWQ 180 NGRALVLLKL KELTMRATQA EQRVHELEQL LRDHALVGLD DTWGDSEMVT SASTYNCLNK 240 RSEMLVCKIA ECNKAFKSSK TLRRHVQQKH SDTTRFFMCN QLTVNGEVCH FETIHSGVLS 300 YHRKYSLAHH RREDWHIFCP FCQIKFARQH EMERHRRICK FRPAPSRPSP HSKGSSVQST 360 VTEMPSESCL NHPLQPWGFV VPDPGHHNHQ IFKMFDSLGR KASTKRPNWG SRPGTLLWGK 420 GGPPRSGGLF QGNGTQPKNK NPGGPKNSRE KWGSRDEWGF HPGKXX |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024357380.1 | 0.0 | uncharacterized protein LOC112273145 isoform X2 | ||||
TrEMBL | A0A2K1IVS1 | 0.0 | A0A2K1IVS1_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9U0C1 | 0.0 | A9U0C1_PHYPA; Predicted protein | ||||
STRING | PP1S400_14V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_18730V3.2.p |