PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_18130V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 636aa MW: 70508.9 Da PI: 4.4853 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.2 | 3.1e-44 | 8 | 130 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pG rFhPtd e++ yLkk+++g++++ + i vd+y+vePwdLp + ++++e yf++ r+kk+++g r+nrat++gyWk+tgkd+ v Pp3c20_18130V3.2.p 8 PGWRFHPTDAEIMGLYLKKQIRGESIQD-NPIVVVDLYSVEPWDLPVEPGGSDQERYFYIARHKKSPKGCRTNRATERGYWKSTGKDRFVQ 97 9************************999.88***************88888999************************************9 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s + g+kktLv+y grap+g++tdWvmheyr+ Pp3c20_18130V3.2.p 98 S--QYSRGMKKTLVYYIGRAPNGQRTDWVMHEYRM 130 9..6779**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-47 | 4 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.333 | 6 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-22 | 8 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MSTHSRSPGW RFHPTDAEIM GLYLKKQIRG ESIQDNPIVV VDLYSVEPWD LPVEPGGSDQ 60 ERYFYIARHK KSPKGCRTNR ATERGYWKST GKDRFVQSQY SRGMKKTLVY YIGRAPNGQR 120 TDWVMHEYRM ADEVYENLRG EQVPYVLVRV FKKNGPGPNN GARYGGPFIE EPWTPPQDSA 180 KPSSGVLEEA QFEEPGELPG ECPDVRGNMS DFLDEESVTP RCASTGDIQS IFHEMPGVGD 240 VGGEDDGITV EDVFGTEQSR VATVNENWRE EVINSDVMID NNVMASLIDL EFDDDDIDLE 300 SGLISPHVGS VGDISIDDYL EMDDLIVPNE ESIVPESSQI QLLPRSTSTT VQLNPQGDIS 360 RRIRLARRQA SYSQSVDLSD PAPSAPELPS RSFHRSSSSS AFAEFFAEDA TPILDQHGPS 420 QELFIDSGLV DYGALPDPVE DYWSNAAGVQ LWVSNADQLQ SIAQGAQSQS DEPPTIDSRA 480 HDLVAPELTP AASPQAEYSL ERLSWRSYLL PSGITTPMRI RPASARSTSE PIIGALKFPC 540 LKLREFSCVE VAAMDCVEGK LHQGVLSGIM KPCIDGNEQQ GWVQCSKRHP QRQVVKGSRS 600 GFVFACMLGV VSSLIWFFLM QGSWRIVKLV FSVIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-34 | 1 | 153 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-34 | 1 | 153 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-34 | 1 | 153 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-34 | 1 | 153 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-34 | 1 | 153 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-34 | 1 | 153 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-34 | 1 | 153 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-34 | 1 | 153 | 15 | 168 | NAC domain-containing protein 19 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10694 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024357598.1 | 0.0 | NAC domain-containing protein 17-like isoform X1 | ||||
TrEMBL | A0A2K1IVP3 | 0.0 | A0A2K1IVP3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S44_300V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-51 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_18130V3.2.p |