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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_17760V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 253aa MW: 28147.2 Da PI: 9.0566 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 36.5 | 7.5e-12 | 142 | 215 | 38 | 114 |
FLO_LFY 38 eaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavr 114 +++++ + +l +l+ ++ ++G+r t+ ki+e+Gft +t++ d el l++s+ + ++ l +Ge +Gik a + Pp3c20_17760V3.4.p 142 IKSTVSDTGDLADLDFFLDGFGIRAETIGKIKEMGFTGKTFMSNVD-ELLTLLDSIKQ--HCHLTLGEEWGIKGAAK 215 122222233355889999***********************98665.56678888887..577899*******9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 6.8E-7 | 143 | 215 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MVRVKGGEWG HVLVVKEPAK HGMAWHVKCT HCGKVFQGNA MRIRSHLLGH PEKVSGCPAC 60 PAEAREELRL SYLAKSQVER KNRQNRSFKA SRTSHQRRKD AQQGDPMLDP KHTEEKLAVE 120 QALRNMAFQA GLPVNYVNHS AIKSTVSDTG DLADLDFFLD GFGIRAETIG KIKEMGFTGK 180 TFMSNVDELL TLLDSIKQHC HLTLGEEWGI KGAAKKWQKG HGIINSQTEL EKWPDPEFKS 240 APGCKEEVLS LP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.14120 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024357504.1 | 0.0 | uncharacterized protein LOC112273240 | ||||
TrEMBL | A0A2K1IVN0 | 0.0 | A0A2K1IVN0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S44_262V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_17760V3.4.p |