PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_17760V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LFY

Protein Properties

Length: 253aa MW: 28147.2 Da PI: 9.0566

Description

LFY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_17760V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FLO_LFY	36.5	7.5e-12	142	215	38	114
FLO_LFY 38 eaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavr 114 +++++ + +l +l+ ++ ++G+r t+ ki+e+Gft +t++ d el l++s+ + ++ l +Ge +Gik a + Pp3c20_17760V3.1.p 142 IKSTVSDTGDLADLDFFLDGFGIRAETIGKIKEMGFTGKTFMSNVD-ELLTLLDSIKQ--HCHLTLGEEWGIKGAAK 215 122222233355889999*********************98665.56678888887..577899*****9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01698	6.8E-7	143	215	IPR002910	Floricaula/leafy protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MVRVKGGEWG HVLVVKEPAK HGMAWHVKCT HCGKVFQGNA MRIRSHLLGH PEKVSGCPAC 60 PAEAREELRL SYLAKSQVER KNRQNRSFKA SRTSHQRRKD AQQGDPMLDP KHTEEKLAVE 120 QALRNMAFQA GLPVNYVNHS AIKSTVSDTG DLADLDFFLD GFGIRAETIG KIKEMGFTGK 180 TFMSNVDELL TLLDSIKQHC HLTLGEEWGI KGAAKKWQKG HGIINSQTEL EKWPDPEFKS 240 APGCKEEVLS LP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.14120	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024357504.1	0.0	uncharacterized protein LOC112273240
TrEMBL	A0A2K1IVN0	0.0	A0A2K1IVN0_PHYPA; Uncharacterized protein
STRING	PP1S44_262V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c20_17760V3.1.p