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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_14750V3.1.p | ||||||||
Common Name | PHYPADRAFT_172615 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 211aa MW: 24331.2 Da PI: 9.3192 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.0003 | 39 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k F+++ L H + H Pp3c20_14750V3.1.p 39 WQCGYCKKIFRNQGFLDLHFDNrH 62 58************9999976655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.559 | 39 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MPFVKDQKYT LPKTCRLHPD NDVYHEQEEN MIELRPMQWQ CGYCKKIFRN QGFLDLHFDN 60 RHSEKLEPSS NSCLADACGA LHCDYYNSLS SKPQIQATCK LAVVEKNRHS CEVLANTCFP 120 ADHSPAAQRL NHFFKRQFCD AHTCKKKLKI FPSGSGINRN KSLIYALTLF TVIVLAIFYA 180 ILYLIKRDTN LLRKGLRRAS FRPPCKVQKE * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15579 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024357038.1 | 1e-158 | uncharacterized protein LOC112272993 | ||||
TrEMBL | A0A2K1IV88 | 1e-156 | A0A2K1IV88_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9TY40 | 1e-155 | A9TY40_PHYPA; Predicted protein | ||||
STRING | PP1S368_21V6.1 | 1e-157 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63280.1 | 4e-56 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_14750V3.1.p |
Entrez Gene | 5946736 |
Publications ? help Back to Top | |||
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