PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_10790V3.2.p
Common NamePHYPADRAFT_90051
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 336aa    MW: 36950.7 Da    PI: 6.7388
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_10790V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000274163123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C+++F  +  L  H+++H
  Pp3c20_10790V3.2.p 41 YECRFCNMRFAKSQALGGHMNRH 63
                        99********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-53868No hitNo description
PROSITE profilePS5015711.0534168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0010094Biological Processspecification of carpel identity
GO:0010097Biological Processspecification of stamen identity
GO:0010158Biological Processabaxial cell fate specification
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MIWRSVFFLE GADNSGSKRK RRSVDEGSTT DEEGDVSKTL YECRFCNMRF AKSQALGGHM  60
NRHRQEREKE QYQHAQQLVS SMAQQQQMPR TWTSMAAELN PLSAGVALAR LSTQLTANPR  120
PDGSRSQIPP QISFNSTPPP INMSSSSSIP SSMSSSYFFP SSSSSNNLHH LQWNVDEFNT  180
TIPRSGSQEG LNVMDFSLQG TSLRDDFLSD VLQSRQDGGS FMGSQFSNMP PLMSRGLSSV  240
ETGSFYSGGE ESVQEKSGTA GLQFDNNHSS LQQSSIRMNG MLQHSTCSSS PLHSSLMNSD  300
IHHDAKSLAN SFARVRTSAP GHTFLMQCND TVEFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356943.10.0uncharacterized protein LOC112272956 isoform X1
TrEMBLA0A2K1IUW20.0A0A2K1IUW2_PHYPA; Uncharacterized protein
STRINGPP1S192_8V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.14e-10C2H2 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]