PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c20_10200V3.2.p | ||||||||
Common Name | PHYPADRAFT_142497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18694.4 Da PI: 8.0683 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.9 | 8.3e-44 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca+dCv+apyfp ++p+kfanvhk+FGa+nv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqq+++ l+ Pp3c20_10200V3.2.p 11 PCAACKLLRRRCARDCVFAPYFPPDEPQKFANVHKVFGAANVNKMLHDLPVHQRGDAVSSMVYEADARVRDPVYGCVGAISSLQQRIAFLQ 101 7****************************************************************************************** PP DUF260 92 aelallkee 100 ++la++++e Pp3c20_10200V3.2.p 102 NQLAVANAE 110 ****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.153 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-43 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MLSKMGSGMS PCAACKLLRR RCARDCVFAP YFPPDEPQKF ANVHKVFGAA NVNKMLHDLP 60 VHQRGDAVSS MVYEADARVR DPVYGCVGAI SSLQQRIAFL QNQLAVANAE ILCMRMQQAA 120 NNAPTLKVEP QATPPSQPPE MSSPLQPQSP ELQHHHKPCT NASESGEAVW T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-49 | 6 | 112 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-49 | 6 | 112 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024357913.1 | 1e-126 | LOB domain-containing protein 4-like | ||||
Swissprot | Q8LBW3 | 8e-61 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2K1IUU8 | 1e-124 | A0A2K1IUU8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S192_67V6.1 | 1e-125 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-48 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c20_10200V3.2.p |
Entrez Gene | 5938698 |
Publications ? help Back to Top | |||
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