PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_10200V3.1.p
Common NamePHYPADRAFT_142497
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 172aa    MW: 18694.4 Da    PI: 8.0683
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_10200V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.98.3e-44111101100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca+dCv+apyfp ++p+kfanvhk+FGa+nv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqq+++ l+
  Pp3c20_10200V3.1.p  11 PCAACKLLRRRCARDCVFAPYFPPDEPQKFANVHKVFGAANVNKMLHDLPVHQRGDAVSSMVYEADARVRDPVYGCVGAISSLQQRIAFLQ 101
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ++la++++e
  Pp3c20_10200V3.1.p 102 NQLAVANAE 110
                         ****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.15310111IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-4311108IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MLSKMGSGMS PCAACKLLRR RCARDCVFAP YFPPDEPQKF ANVHKVFGAA NVNKMLHDLP  60
VHQRGDAVSS MVYEADARVR DPVYGCVGAI SSLQQRIAFL QNQLAVANAE ILCMRMQQAA  120
NNAPTLKVEP QATPPSQPPE MSSPLQPQSP ELQHHHKPCT NASESGEAVW T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4961127112LOB family transfactor Ramosa2.1
5ly0_B1e-4961127112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357913.11e-126LOB domain-containing protein 4-like
SwissprotQ8LBW38e-61LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2K1IUU81e-124A0A2K1IUU8_PHYPA; Uncharacterized protein
STRINGPP1S192_67V6.11e-125(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-48LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]