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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_950V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | CO-like | ||||||||
Protein Properties | Length: 475aa MW: 51989.7 Da PI: 6.302 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.1 | 4.3e-09 | 22 | 65 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.........Ht 38 r C+ + +k ++++C ++ +lC++C ++ H+ H+ Pp3c1_950V3.3.p 22 RACDVCASKSARWYCGADRAYLCDKCDTQVHSAnalarrherHR 65 68****************************95567777744455 PP | |||||||
2 | CCT | 64.5 | 3.1e-22 | 428 | 471 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RYk Kr++R+F+KkirYe+RK +Ae+RpR+KGrFvk++ Pp3c1_950V3.3.p 428 REARVMRYKAKRRSRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 471 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.599 | 19 | 66 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.9E-7 | 19 | 66 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-7 | 22 | 63 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.55E-6 | 22 | 63 | No hit | No description |
PROSITE profile | PS51017 | 15.666 | 428 | 470 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.4E-17 | 428 | 470 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MTTKGASRSA ATAMAIAGRA SRACDVCASK SARWYCGADR AYLCDKCDTQ VHSANALARR 60 HERHRLTPSG VAMQPARKPA ADLMKDKTFS QRKHTISKKT HASPVQVLPP RKRSRTSRPH 120 PHRQAQHITE ATPASKLHNA KDVEVEDEFL TVTDAFDTED FLVDDTQEVP SLITVAQDSS 180 PSSSELDLSS DFSPELNSDA QGGSSSPSSD SFVAYFKGKA AQDDCFSDDV MSDQFLVPDA 240 FDDGINICCD MDGNISLAGD ACFISGDIPG LDGFEDFGSR ELSNNTYSFD LALRDSLPGA 300 FEGDGAATSD ARGTSLKQNV VGVENDQFST GPFANFFAKN RKSETVHSSP ENIKNEAKEI 360 LRCCLEGLTE EDMRTVPSLR LNYEDVITAW SDRGEPWVNP ENFPSEATDV GLVPDMGQGG 420 ADDGHGGREA RVMRYKAKRR SRLFSKKIRY EVRKLNAEKR PRMKGRFVKR TKSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 438 | 454 | RRSRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392069.1 | 0.0 | zinc finger protein CONSTANS-LIKE 6-like | ||||
TrEMBL | A0A2K1L6G5 | 0.0 | A0A2K1L6G5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S200_107V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 7e-25 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_950V3.3.p |