PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_8210V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 184aa    MW: 20181.4 Da    PI: 7.6362
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_8210V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000157193123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C+ C + F++   L  H+++H
  Pp3c1_8210V3.2.p 71 YMCNFCRREFRTAQGLGGHMNVH 93
                      89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.77E-76898No hitNo description
Gene3DG3DSA:3.30.160.604.3E-46997IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3857198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MMGTGHIAVL LPDQEHLKRT RPWGGNIMHE PDVKGGGDVP YWRKKVLVTN TDATDSSGDA  60
STSEQWPPRS YMCNFCRREF RTAQGLGGHM NVHRRERAQA NQLAHLTNSN EALLASTNSQ  120
DANSATCMQG EWKRGYYNYL NGAPLSQQAS TLSSNQPLGG ILHSSEKPGD TVDLELRLGQ  180
KSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-126693229superman protein
2l1o_A6e-126693229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371225.11e-137zinc finger protein 2-like
TrEMBLA0A2K1L7I01e-135A0A2K1L7I0_PHYPA; Uncharacterized protein
STRINGPP1S38_206V6.11e-135(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.16e-18C2H2 family protein