PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_7740V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 451aa MW: 48108.9 Da PI: 7.9992 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 311 | 362 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +g+++AeIrdp +ng +r++lg+f+tae A a+++a++kl+g Pp3c1_7740V3.2.p 311 PHYRGVRHRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAELAGLAYDRAALKLRG 362 68*****888.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-12 | 311 | 362 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-28 | 311 | 370 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-21 | 312 | 371 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 312 | 371 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-34 | 312 | 376 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 312 | 370 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-12 | 313 | 324 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-12 | 352 | 372 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MSAAVHASQW RGAQVGGLWY EDAERARRTH VDTARHCAQL DDDGVIEPGP EAMRAPESPF 60 QFAVPDCLPT PNAGFALDYL SLMESPKLDS QFDFEHHSSD NGSTGESLLV AEGSWKASNA 120 REPSSGLSWA TSVSQSLKKA LGTNLAEQMR ETVGAFVNTL NVAEYSTLGS VNAMKSTKSR 180 PCRSLKPLLA LDIPGKVQTR TAVVGDTVNV AVVRTVSSPS GSKRVQFQGS ESIAAQFSEV 240 DEALPPLDGS IGDDMSSLFD LLEEPASQPK SAGADAKESA GEVGFKVSPP SQHEKMTVQR 300 KGAKQQTAWQ PHYRGVRHRP WGKFAAEIRD PAKNGARVWL GTFDTAELAG LAYDRAALKL 360 RGSRALLNFP LRATTALSDP ESFPAPPVSS STRKFAQGSA GSSTGRQSLG LSYTARYPAV 420 EMAGTFVPKK RVGLGSGTDA TKRLRVEDLC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-32 | 312 | 375 | 5 | 68 | ATERF1 |
3gcc_A | 8e-32 | 312 | 375 | 5 | 68 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396614.1 | 0.0 | uncharacterized protein LOC112292405 | ||||
TrEMBL | A0A2K1L7C3 | 0.0 | A0A2K1L7C3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S38_262V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 8e-34 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_7740V3.2.p |