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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pp3c1_7740V3.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family |
ERF |
Protein Properties |
Length: 451aa MW: 48108.9 Da PI: 7.9992 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pp3c1_7740V3.1.p | genome | COSMOSS | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 311 | 362 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr ++ +g+++AeIrdp +ng +r++lg+f+tae A a+++a++kl+g
Pp3c1_7740V3.1.p 311 PHYRGVRHRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAELAGLAYDRAALKLRG 362
68*****888.***********9987..*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 451 aa
Download sequence Send
to blast |
MSAAVHASQW RGAQVGGLWY EDAERARRTH VDTARHCAQL DDDGVIEPGP EAMRAPESPF 60 QFAVPDCLPT PNAGFALDYL SLMESPKLDS QFDFEHHSSD NGSTGESLLV AEGSWKASNA 120 REPSSGLSWA TSVSQSLKKA LGTNLAEQMR ETVGAFVNTL NVAEYSTLGS VNAMKSTKSR 180 PCRSLKPLLA LDIPGKVQTR TAVVGDTVNV AVVRTVSSPS GSKRVQFQGS ESIAAQFSEV 240 DEALPPLDGS IGDDMSSLFD LLEEPASQPK SAGADAKESA GEVGFKVSPP SQHEKMTVQR 300 KGAKQQTAWQ PHYRGVRHRP WGKFAAEIRD PAKNGARVWL GTFDTAELAG LAYDRAALKL 360 RGSRALLNFP LRATTALSDP ESFPAPPVSS STRKFAQGSA GSSTGRQSLG LSYTARYPAV 420 EMAGTFVPKK RVGLGSGTDA TKRLRVEDLC *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2gcc_A | 8e-32 | 312 | 375 | 5 | 68 | ATERF1 |
3gcc_A | 8e-32 | 312 | 375 | 5 | 68 | ATERF1 |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |