PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_41700V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 656aa MW: 73467.7 Da PI: 9.1456

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_41700V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	612	633	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+Cg++F +++L +H+r H Pp3c1_41700V3.2.p 612 ECPHCGRTF-KPDSLLVHMRGcH 633 5******.********955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	2.6E-37	18	185	IPR010369	Protein of unknown function DUF966
Pfam	PF13913	4.0E-8	610	632	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MYSPSSKSMA LEEEYSIVQV VYQLNWDGKF EDPHMIEVQY PPGQDGVRLR DVKKRLTLLR 60 GQGINHSFSW SYKRNYKSTF IWKDLSDDDV IHPLHGSGDF VLKASQLIDI FASKPAENLA 120 KCQNKEKQGS FKTQVSRGCG LDLSNQSDHR SYRIMWNGNV ACANRGNSLN AAKQSRSARR 180 SDDSKQEVID VERSDFCLSS SDNEISPRLL KMVNCKPVKD TLAKIRQSST LQGVQTLPYD 240 SLPSSIEPPS TPGSAKRLWK REIRKSLFGM RNTNLSPPSE RSGEYALLSP EASHVECMHD 300 DISFWSGCRS KSLSTLHLSE IKEEHEENDK QEIDQSTSNI IRSLWSRWTR GSSKGRRSLG 360 RTCEVSLIHP SDAAKTLKTK THPQANVLRT CSNSPIKEKI STHVSRSCQE TRHLPVLHRK 420 SSRTPEENQI PRKKELAHCQ ISKAKILTKI TLSRTEVNFT IADEEAPSNV NPHNNPRELN 480 TKEAVLSVPS LQSEPDSSEI DIDKGSSEKD AETPTSAVTR VLVKSAINSN GPPSVKKTTS 540 PMPLPPGFHK GTNDTKPVQT PRKAIGKKCI NFPENHEKSF IHGLTTSDWE KALQDPETDC 600 LPPPNFGQFL QECPHCGRTF KPDSLLVHMR GCHPPEYARA FSARASPHQT RSQGY*

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MYSPSSKSMA LEEEYSIVQV VYQLNWDGKF EDPHMIEVQY PPGQDGVRLR DVKKRLTLLR  60
GQGINHSFSW SYKRNYKSTF IWKDLSDDDV IHPLHGSGDF VLKASQLIDI FASKPAENLA  120
KCQNKEKQGS FKTQVSRGCG LDLSNQSDHR SYRIMWNGNV ACANRGNSLN AAKQSRSARR  180
SDDSKQEVID VERSDFCLSS SDNEISPRLL KMVNCKPVKD TLAKIRQSST LQGVQTLPYD  240
SLPSSIEPPS TPGSAKRLWK REIRKSLFGM RNTNLSPPSE RSGEYALLSP EASHVECMHD  300
DISFWSGCRS KSLSTLHLSE IKEEHEENDK QEIDQSTSNI IRSLWSRWTR GSSKGRRSLG  360
RTCEVSLIHP SDAAKTLKTK THPQANVLRT CSNSPIKEKI STHVSRSCQE TRHLPVLHRK  420
SSRTPEENQI PRKKELAHCQ ISKAKILTKI TLSRTEVNFT IADEEAPSNV NPHNNPRELN  480
TKEAVLSVPS LQSEPDSSEI DIDKGSSEKD AETPTSAVTR VLVKSAINSN GPPSVKKTTS  540
PMPLPPGFHK GTNDTKPVQT PRKAIGKKCI NFPENHEKSF IHGLTTSDWE KALQDPETDC  600
LPPPNFGQFL QECPHCGRTF KPDSLLVHMR GCHPPEYARA FSARASPHQT RSQGY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024398134.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398207.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398286.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398366.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398442.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398529.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398612.1	0.0	uncharacterized protein LOC112293172
TrEMBL	A0A2K1LBT8	0.0	A0A2K1LBT8_PHYPA; Uncharacterized protein
STRING	PP1S111_119V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c1_41700V3.2.p