PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_40330V3.3.p | ||||||||
Common Name | PHYPADRAFT_168020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 21357.8 Da PI: 10.6208 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 21.6 | 5.6e-07 | 54 | 101 | 4 | 47 |
AP2 4 kGVrwdkkrgrWvAeIrdpse...ng..krkrfslgkfgtaeeAakaai 47 kGV +++ +gr+ +eIr +e + ++ +++lg+f t ++Aa+a + Pp3c1_40330V3.3.p 54 KGVIRRP-NGRFSCEIRIAKEmvtDEsyRKGKVWLGTFRTRFQAARALD 101 9**9899.8*********777786448666****************966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.853 | 52 | 118 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-7 | 53 | 108 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-14 | 54 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0048 | 54 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MDSQNDFQTI FNSLPELDPD FSLPELSVTI LTRRDHWKVY CILYRLRKAC KVSKGVIRRP 60 NGRFSCEIRI AKEMVTDESY RKGKVWLGTF RTRFQAARAL DVGKLFFSRK KRKNYHNPET 120 EAKLLIFKEN PGVETMKEMV EYVQELAKLY GENGTVPPSD WRIKRVPRRS RQKKPRLSNC 180 P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 173 | RRSRQKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1767 | 0.0 | gametophore |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372405.1 | 1e-133 | uncharacterized protein LOC112280794 | ||||
Refseq | XP_024372410.1 | 1e-133 | uncharacterized protein LOC112280794 | ||||
Refseq | XP_024372416.1 | 1e-133 | uncharacterized protein LOC112280794 | ||||
TrEMBL | A9T4J2 | 1e-132 | A9T4J2_PHYPA; Predicted protein | ||||
STRING | PP1S163_124V6.3 | 1e-133 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 2e-07 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_40330V3.3.p |
Entrez Gene | 5936701 |
Publications ? help Back to Top | |||
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