PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_38820V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 665aa    MW: 72394.7 Da    PI: 7.7562
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_38820V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.41.9e-16451497455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k+Lq
  Pp3c1_38820V3.5.p 451 VHNQSERRRRDRINEKMRALQELIPNS-----NKTDKASMLEEAIEYLKMLQ 497
                        6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.24E-19445507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.324447496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.91E-18450501No hitNo description
Gene3DG3DSA:4.10.280.109.6E-18451505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-14451497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-17453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MQGQSSKCNK PQWQANYPTT WSSGQGTEDG VTPGKPVTSK SDALLEAAVN EAPTEVHPGH  60
HIDVAHDEMV SWLQYPLDDT LERNYCSDFF GELPDSHTQL LRESFGHGST KTARTSYLGS  120
PGNDSVMNRA STTDTAMLLG AGRAAGFLPQ AGAEAFSKVR TIHSLQPSSV TKWQQPHPNS  180
SNGSNMCATA NLATTRAPPS APPSNPMLPP RTQPMIPNVN TQTPQPNNKP GSMNFSHFSR  240
PAALMKANLH SLTGMNSVPP PSARFKQQQN QTGKPTVEAC TSTGSSIAES TTAGQRSSGT  300
QQELKTQPGV TEREQSNGIK DCRWQSAPSL SPKKDRDYVV SEGDCKKTFN DQETYRISGV  360
TSDAVLASSE KGVSHVTQHP DIQEPTITSS SGGCGTSAER PKGFATSNKR KSSEREDTEC  420
QSEDGEDESI DTKKPVTGRG STAKRSRAAE VHNQSERRRR DRINEKMRAL QELIPNSNKT  480
DKASMLEEAI EYLKMLQLQL QMISMRTGMT LPPMVVPGGL QQHMQMPQMP GMPSMGMGMG  540
MVPMGLSHGM MMDMGVTAQG RGVVPMQSHA GPSLNGSMAS ASSMVDVHDP RYLASGVIDP  600
YNAYLARQHQ PMQMTQPLNI DKYNAYLMQQ HQLQQQQQHH HHQQQHPQHQ QHQQTSNMNG  660
GPSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1455460ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.47710.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383540.10.0uncharacterized protein LOC112286119
TrEMBLA0A2K1LBG90.0A0A2K1LBG9_PHYPA; Uncharacterized protein
STRINGPP1S147_126V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-37phytochrome interacting factor 3