PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_38820V3.10.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 727aa    MW: 79295.3 Da    PI: 7.2468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_38820V3.10.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-16513559455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k+Lq
  Pp3c1_38820V3.10.p 513 VHNQSERRRRDRINEKMRALQELIPNS-----NKTDKASMLEEAIEYLKMLQ 559
                         6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-19507569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.324509558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-17512563No hitNo description
Gene3DG3DSA:4.10.280.101.1E-17513567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-14513559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-17515564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MNHCVPEWDR SDDMLDALIP SDDFHGPVYG KAEFVRSRKS HFCQVPVQNT LEAGGNDNGS  60
VKMQGQSSKC NKPQWQANYP TTWSSGQGTE DGVTPGKPVT SKSDALLEAA VNEAPTEVHP  120
GHHIDVAHDE MVSWLQYPLD DTLERNYCSD FFGELPDSHT QLLRESFGHG STKTARTSYL  180
GSPGNDSVMN RASTTDTAML LGAGRAAGFL PQAGAEAFSK VRTIHSLQPS SVTKWQQPHP  240
NSSNGSNMCA TANLATTRAP PSAPPSNPML PPRTQPMIPN VNTQTPQPNN KPGSMNFSHF  300
SRPAALMKAN LHSLTGMNSV PPPSARFKQQ QNQTGKPTVE ACTSTGSSIA ESTTAGQRSS  360
GTQQELKTQP GVTEREQSNG IKDCRWQSAP SLSPKKDRDY VVSEGDCKKT FNDQETYRIS  420
GVTSDAVLAS SEKGVSHVTQ HPDIQEPTIT SSSGGCGTSA ERPKGFATSN KRKSSEREDT  480
ECQSEDGEDE SIDTKKPVTG RGSTAKRSRA AEVHNQSERR RRDRINEKMR ALQELIPNSN  540
KTDKASMLEE AIEYLKMLQL QLQMISMRTG MTLPPMVVPG GLQQHMQMPQ MPGMPSMGMG  600
MGMVPMGLSH GMMMDMGVTA QGRGVVPMQS HAGPSLNGSM ASASSMVDVH DPRYLASGVI  660
DPYNAYLARQ HQPMQMTQPL NIDKYNAYLM QQHQLQQQQQ HHHHQQQHPQ HQQHQQTSNM  720
NGGPSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1517522ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.47710.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383540.10.0uncharacterized protein LOC112286119
TrEMBLA0A2K1LBG90.0A0A2K1LBG9_PHYPA; Uncharacterized protein
STRINGPP1S147_126V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-37phytochrome interacting factor 3