PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_36129V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 634aa MW: 68797.7 Da PI: 4.7587 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +grWvAeIr+p r +r +lg+f ta eAa+a+++a++ ++g Pp3c1_36129V3.1.p 114 QYRGVRQRQ-WGRWVAEIREP-----RlrTRMWLGTFSTALEAARAYDEAALVYHG 163 6*****999.**********9.....445************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.2E-35 | 114 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-29 | 114 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.339 | 114 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-20 | 114 | 173 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.73E-29 | 114 | 172 | No hit | No description |
PRINTS | PR00367 | 2.2E-9 | 115 | 126 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-12 | 115 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 634 aa Download sequence Send to blast |
MTEIAMDTVR QQQQQPPSET SSCQPVVDRQ EKAGEQAALL VTEQLEAEHD HVDASSETNS 60 SASDVDSKSG AVTVDAKARG RKKRGAAGSS SSGTGGGQER VRKRRGGPEN GLHQYRGVRQ 120 RQWGRWVAEI REPRLRTRMW LGTFSTALEA ARAYDEAALV YHGPGARLNL PHETYQKPEN 180 IAPLGTHGVE YHFAHMNSNK IMGPGAATVA LMGNDGGKTD NYGMRVVDTP LSRRSSSCSV 240 ESIGLPAGCN FNHDPQWWTS SGSTSLNSTL RAIPSFANAP PTASSCNDGS ERFYLSQGPI 300 NLQTRPNSCE LPPDRQQRRQ NFAVPLEMCA GLFQSKYTGS LGLRSPNIHC ELGADCPYAD 360 RPGRGLHENG IHNPSTVTYA KSSTDQTDTP FQTDQYQPTN EPARDTSREM GPAFTATPQC 420 PDQPVTALVP PKETNTFTAP PVSDDTCQDC SSLEVAKKFE YSISEGSAEN SFATEFGSFD 480 FEPETFQSIT SSVESEHDKM LSSITAASSF TDQGPPVSSE TSPAILRGMD VIDEGSPSSF 540 WRDSSTSSHR SLDAPDAYAW NNIQEQRFLL KPCPDFDDMN GCWDDVASPI LAPPPPLLDL 600 PDLPNLSFDT LTDVFCSTPK VADVDKATNI RDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 104 | 173 | 6 | 74 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372327.1 | 0.0 | uncharacterized protein LOC112280747 | ||||
TrEMBL | A0A2K1LB51 | 0.0 | A0A2K1LB51_PHYPA; Uncharacterized protein | ||||
STRING | PP1S28_144V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 9e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_36129V3.1.p |