PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_28060V3.1.p | ||||||||
Common Name | PHYPADRAFT_160356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 294aa MW: 33563.4 Da PI: 6.5441 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.7 | 6.1e-13 | 49 | 134 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ + v + +++++e+ ++ rg + ++We+ ++ +e+g+ ++ kqC++k+++l+kr+k ++ ++ + ++ ++++fd+++ Pp3c1_28060V3.1.p 49 EWSARAVALFLDLYEEKYFEMDRGGFRSKDWEQLVERFnMEGGCGKTMKQCRDKMDSLKKRHKLERGRKAST-GAETCSWVWFDKMD 134 5*******************************9665555*************************99999985.666679*******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0022 | 46 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 6.5E-16 | 47 | 135 | No hit | No description |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDSDRSQTPL PVSLLLPPPP MSMLSTSSLQ HPELEKNLTV RNVEEKREEW SARAVALFLD 60 LYEEKYFEMD RGGFRSKDWE QLVERFNMEG GCGKTMKQCR DKMDSLKKRH KLERGRKAST 120 GAETCSWVWF DKMDGMFGDH SKHQGILLGP PEASDVKFSA DKFRIAGGEN VIMEEQSRRI 180 VGSWREAKKV LQELPLSAEE RGKARTLLLE KKEEERLEYF VGDFEEVSFC LKLLVERASI 240 QSSGDAGVIQ MDFAVASDIQ RRLEEVLTDV ISLKRRAISD LRYFMPAAKN SKS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392159.1 | 0.0 | uncharacterized protein LOC112290232 | ||||
TrEMBL | A0A2K1LA04 | 0.0 | A0A2K1LA04_PHYPA; Uncharacterized protein | ||||
STRING | PP1S21_282V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP11635 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.2 | 4e-21 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_28060V3.1.p |
Entrez Gene | 5919345 |
Publications ? help Back to Top | |||
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