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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pp3c1_27630V3.1.p |
Common Name | PHYPADRAFT_160342 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family |
ERF |
Protein Properties |
Length: 544aa MW: 59140.9 Da PI: 4.3503 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pp3c1_27630V3.1.p | genome | COSMOSS | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 65.5 | 1e-20 | 222 | 271 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdps+ r +lg+++tae+Aa+a+++a+++++g
Pp3c1_27630V3.1.p 222 KYRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYDTAEQAAQAYDRAAREIRG 271
8********.**********965...4*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0034059 | Biological Process | response to anoxia |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 544 aa
Download sequence Send
to blast |
MPGSDIYASS SSPLKRKSLK MVPGQSLKRE YSSSSSDDEG FNRNIKTKQC PKRVRVICTD 60 PDATDSSSDE EDNFRSLRNS QRRLVQEIHM SNEFGAADEL SSDSELDEPE VPSYHSVFIA 120 KAMQCSVSYA SPVDSESMLA SSSFYDKPWQ SKKKAPKATE KVTKLATAVE RPVTAVNTPK 180 SSVAPSQATR SVSMSTSKPR VGSKPQAKAS SFSAITDGKP HKYRGVRQRP WGKWAAEIRD 240 PSKGVRLWLG TYDTAEQAAQ AYDRAAREIR GPQAHTNFSS DAEVEQYTST TSGSNVSQKK 300 SAKKEEPLKE SAVVREPATK RQASTKNSVS KPMCSVQVER IIAGDVEEQC VSRGEDEDME 360 MFGSCDTIEE DIMSEDILFD NLNEDCGYLM CSPSSLSLDE SEGSPCSSLT ACEPSSSDVD 420 ASVKSEADSF STPEYMTPKQ VAAVTESFFA SSSENSSDSE SDLSDSLNET NCHKEVESCC 480 DLGEVFLSDD FLFDFPAGDV TNTEGLDFAA GLEFLEGDIG DLAFGSDQNE SLEWLNAADI 540 LVT*
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Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |