PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_26600V3.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 362aa MW: 40963.4 Da PI: 8.3064 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.4 | 4e-16 | 135 | 234 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+l sdv+++gr++lpkk ae+h + +e++t++l+d +g+ W+ +++y ++ks++y+l+ +Fv+ ++L+egD ++ + ++ Pp3c1_26600V3.6.p 135 FQKELRASDVSSLGRIILPKKDAERHlpFLAVREGITMSLMDyHTGQYWTARYRYwpNNKSRMYLLE-KIGSFVSFHKLEEGDLLLCY--RN 223 99**************************66677999******8899*********877777778777.8****************999..56 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++ +v++ +r Pp3c1_26600V3.6.p 224 PQGAYVIRGRR 234 77777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.07E-20 | 133 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-24 | 133 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.58E-20 | 133 | 218 | No hit | No description |
Pfam | PF02362 | 1.1E-12 | 135 | 221 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-15 | 135 | 236 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.375 | 135 | 236 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MLMQYIRCAP EGQRSELVAA TMMQGMECWG TTPPPKWHYN PNSSTNLAQM NAPQFHPPWN 60 GNWGDRADLV GTGDVPNKAT AYSRALRKSC LLNQRGYLKA RRNRSDSADK LRHHQSRQRR 120 AMSNLECCQG FQFLFQKELR ASDVSSLGRI ILPKKDAERH LPFLAVREGI TMSLMDYHTG 180 QYWTARYRYW PNNKSRMYLL EKIGSFVSFH KLEEGDLLLC YRNPQGAYVI RGRRVAAEAM 240 SSPRREPSPD RAQAKETATR PVVLESYKDE CNSTGSSDAS NPSFDTPDSA LEELLSGKDV 300 SDCMSGLQDF LDGDLGITRD WQGEKLGGSL VRSFQPPLLD LDFDPVEGML CMPNVKQRYM 360 D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 4e-31 | 132 | 238 | 2 | 109 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 4e-31 | 132 | 238 | 2 | 109 | B3 domain-containing transcription factor FUS3 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1600 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389244.1 | 0.0 | uncharacterized protein LOC112288836 isoform X1 | ||||
Refseq | XP_024389252.1 | 0.0 | uncharacterized protein LOC112288836 isoform X1 | ||||
Refseq | XP_024389262.1 | 0.0 | uncharacterized protein LOC112288836 isoform X1 | ||||
Refseq | XP_024394984.1 | 0.0 | uncharacterized protein LOC112291592 isoform X1 | ||||
TrEMBL | A0A2K1L9T4 | 0.0 | A0A2K1L9T4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S21_125V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 3e-34 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_26600V3.6.p |