PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_26530V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 243aa MW: 27920.9 Da PI: 10.0771 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.7 | 6.6e-16 | 135 | 221 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+l sdv+++gr++lpkk ae+h + +e++t++l+d +g+ W+ +++y ++ks++y+l+ +Fv+ ++L+egD ++ + Pp3c1_26530V3.1.p 135 FQKELRASDVSSLGRIILPKKDAERHlpFLAVREGITMSLMDyHTGQYWTARYRYwpNNKSRMYLLE-KIGSFVSFHKLEEGDLLLCY 221 99**************************66677999******8899*********877777778777.8**************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.19E-21 | 133 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-24 | 133 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.41E-20 | 133 | 218 | No hit | No description |
SMART | SM01019 | 1.5E-13 | 135 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-13 | 135 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.079 | 135 | 242 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MLMQYIRCAP EGQRSELVAA TMMQGMECWG TTPPPKWHYN PNSSTNLAQM NAPQFHPPWN 60 GNWGDRADLV GTGDVPNKAT AYSRALRKSC LLNQRGYLKA RRNRSDSADK LRHHQSRQRR 120 AMSNLECCQG FQFLFQKELR ASDVSSLGRI ILPKKDAERH LPFLAVREGI TMSLMDYHTG 180 QYWTARYRYW PNNKSRMYLL EKIGSFVSFH KLEEGDLLLC YRNPQGAYVS SHGVGNFLAW 240 RV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 4e-30 | 132 | 223 | 2 | 93 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 4e-30 | 132 | 223 | 2 | 93 | B3 domain-containing transcription factor FUS3 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1600 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389244.1 | 1e-173 | uncharacterized protein LOC112288836 isoform X1 | ||||
Refseq | XP_024389252.1 | 1e-173 | uncharacterized protein LOC112288836 isoform X1 | ||||
Refseq | XP_024389262.1 | 1e-173 | uncharacterized protein LOC112288836 isoform X1 | ||||
Refseq | XP_024394984.1 | 1e-173 | uncharacterized protein LOC112291592 isoform X1 | ||||
TrEMBL | A0A2K1L9T3 | 0.0 | A0A2K1L9T3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S21_125V6.1 | 1e-173 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-31 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_26530V3.1.p |