PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_23930V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 307aa MW: 32751.1 Da PI: 4.4159 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00012 | 281 | 304 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC+ C+++F++ ++ +Hi H Pp3c1_23930V3.2.p 281 YKCTGCDRTFTSELSMSQHIAAkH 304 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.242 | 281 | 306 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0034 | 281 | 304 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 283 | 304 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEFWGVEVPP GKPTSCPPGD GMHLHVSQAA LGKSKAKSGK ENERVILKVL VDDSEIVLGT 60 LSEGKCDQMQ LDLVFDREFK VSHSSSSSSI YLCGYRTECP EEYDSEDEEE DDEEDANVPA 120 AVPIEHKAGK VITEVAGKAA TAAANAVQKA VKKQVVQDDV SDEEDDEEDS DDDMDEEDDE 180 DESDESEEEE LKVEAPKAEK KRAAAEPATK VVEKKSKTDA SPKPASGSGG KKGVKGGQAM 240 PVANETPKTP TDKGVKPAKT PKGTPTAPPT TPVSEKKSGQ YKCTGCDRTF TSELSMSQHI 300 AAKHKA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.14397 | 0.0 | gametophore| protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389222.1 | 0.0 | histone deacetylase HDT2-like isoform X4 | ||||
TrEMBL | A0A2K1L9F1 | 1e-138 | A0A2K1L9F1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S59_160V6.1 | 1e-139 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 5e-17 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_23930V3.2.p |