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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pp3c1_22185V3.6.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family |
C3H |
| Protein Properties |
Length: 272aa MW: 28657.8 Da PI: 9.4737 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c1_22185V3.6.p | genome | COSMOSS | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.3 | 5.5e-08 | 37 | 63 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC++f C++ d+C+FaHg+
Pp3c1_22185V3.6.p 37 FKTRLCNRFDTPEGCRFSDKCHFAHGE 63
79***********************96 PP
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| 2 | zf-CCCH | 36.9 | 6e-12 | 237 | 261 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC +f++ GtC +G+rC+FaHg
Pp3c1_22185V3.6.p 237 FKTKLCENFSK-GTCTFGERCHFAHG 261
69*********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 0.045 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.671 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.7E-5 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.1E-13 | 37 | 68 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.24E-8 | 37 | 67 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 5.61E-14 | 141 | 220 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 4.4E-11 | 149 | 219 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 2.4E-15 | 149 | 218 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.739 | 150 | 214 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 4.0E-11 | 152 | 215 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 2.58E-14 | 152 | 214 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-15 | 234 | 268 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.28E-8 | 235 | 266 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.8E-7 | 236 | 262 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.718 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.7E-9 | 237 | 261 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MGGLAPLANI SSMGGGGARK VVGGVGLDDQ GANLGGFKTR LCNRFDTPEG CRFSDKCHFA 60
HGEKELRKSS NNFNTPSVER DSYARQDYSR DQGPSSASYR GGSGSGMYGT NGGRFGSGGP 120
GGRDREASRF GSYREPTPPG MAAANSFGAS STAKISIEAS LAGAIIGKGG INAKQICRLT 180
GAKLSIKEHE TDAGLRNVEM EGSFEQIKQA SQMVRHVLIH RDSVPARPPA GAVSHNFKTK 240
LCENFSKGTC TFGERCHFAH GAEDLRDPYR S*
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