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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pp3c1_22185V3.4.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family |
C3H |
| Protein Properties |
Length: 346aa MW: 36398.2 Da PI: 9.2634 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c1_22185V3.4.p | genome | COSMOSS | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 23.9 | 7.5e-08 | 111 | 137 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC++f C++ d+C+FaHg+
Pp3c1_22185V3.4.p 111 FKTRLCNRFDTPEGCRFSDKCHFAHGE 137
79***********************96 PP
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| 2 | zf-CCCH | 36.5 | 8.2e-12 | 311 | 335 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC +f++ GtC +G+rC+FaHg
Pp3c1_22185V3.4.p 311 FKTKLCENFSK-GTCTFGERCHFAHG 335
69*********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.296 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.66E-6 | 42 | 66 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-7 | 43 | 66 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.671 | 110 | 138 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.045 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.7E-5 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.0E-12 | 111 | 142 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.16E-7 | 111 | 141 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 9.4E-14 | 215 | 293 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 3.7E-15 | 223 | 292 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 4.4E-11 | 223 | 293 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.739 | 224 | 288 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 6.0E-11 | 226 | 289 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 6.54E-14 | 226 | 288 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-15 | 308 | 342 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.83E-8 | 309 | 340 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.718 | 310 | 337 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.8E-7 | 310 | 336 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.7E-9 | 311 | 335 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MDPYGPPRKR PRPESGPLNG SNGTNSGHGG GDDYNKDGSS GNRTKPCTKF FSTSGCPYGE 60
GCHFLHFVPG GVQSMGGLAP LANISSMGGG GARKVVGGVG LDDQGANLGG FKTRLCNRFD 120
TPEGCRFSDK CHFAHGEKEL RKSSNNFNTP SVERDSYARQ DYSRDQGPSS ASYRGGSGSG 180
MYGTNGGRFG SGGPGGRDRE ASRFGSYREP TPPGMAAANS FGASSTAKIS IEASLAGAII 240
GKGGINAKQI CRLTGAKLSI KEHETDAGLR NVEMEGSFEQ IKQASQMVRH VLIHRDSVPA 300
RPPAGAVSHN FKTKLCENFS KGTCTFGERC HFAHGAEDLR DPYRS*
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