PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_20960V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 548aa    MW: 59392.8 Da    PI: 5.2944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_20960V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.3e-12366408754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+++N+++  Lr+++Pk      +K++ a+iL  A+eY+k+L
  Pp3c1_20960V3.2.p 366 MAERRRRQKLNDRLYMLRSVVPKI-----TKMDRASILGDAIEYLKEL 408
                        79*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.72359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16362431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-14365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9365408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-15366425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.55E-13366412No hitNo description
CDDcd048736.67E-7476517No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010444Biological Processguard mother cell differentiation
GO:0050826Biological Processresponse to freezing
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MASHSNPDLW MGAASSDIRI SSNSGLELEG DSSWKAPKSS RNTSNMDVAK QVVQDTMRAA  60
SFCKGVLDEE WYTPETSLME LSSYSSPYGA QDARSNFSLL DSSLNYDNGN LMANFRPAPS  120
STLGIGQLES NRILSDLACT GQCSSVGLLS SRHLRRSTTT DSLGSGLPTS FSQGAVIPSG  180
SLSNITSRNT NTESTNFPPS FSDAYNAPAL DLDKTGKECA GDIRDKLEPY QTNKRMESYP  240
PRQQAFSQKR AASPRSMGGG TVSPTSKSPP RVVTSTSNDS SVDIRDEDSP HVQNFRGAEL  300
HSGSDDPNDI GIDGDDHNGK DDDDLDESGD GSGGPYEVEE GAGNGTQNNG KSKAKGKRGL  360
PAKNLMAERR RRQKLNDRLY MLRSVVPKIT KMDRASILGD AIEYLKELLQ RINDIHNELE  420
EAKLEQSRSM PSSPTPRSTH HGYPTAVKEE CPVLPNPESQ PPRVEVRKRE GQALNIHMFC  480
ARRPGLLLST VRALDALGLD VQQAVISCFN GFALDLFRAE AKDVDVGPEE IKAVLLLTAE  540
YGMHSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-15358425377Transcription factor MYC2
5gnj_B6e-15358425377Transcription factor MYC2
5gnj_E6e-15358425377Transcription factor MYC2
5gnj_F6e-15358425377Transcription factor MYC2
5gnj_G6e-15358425377Transcription factor MYC2
5gnj_I6e-15358425377Transcription factor MYC2
5gnj_M6e-15358425377Transcription factor MYC2
5gnj_N6e-15358425377Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396339.10.0uncharacterized protein LOC112292197 isoform X2
TrEMBLA0A2K1L9100.0A0A2K1L910_PHYPA; Uncharacterized protein
STRINGPP1S257_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.12e-77bHLH family protein