PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_20960V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 552aa    MW: 59747.2 Da    PI: 5.2944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_20960V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12370412754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+++N+++  Lr+++Pk      +K++ a+iL  A+eY+k+L
  Pp3c1_20960V3.1.p 370 MAERRRRQKLNDRLYMLRSVVPKI-----TKMDRASILGDAIEYLKEL 412
                        79*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.72363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16366435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9369412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-14369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-15370429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.91E-13370416No hitNo description
CDDcd048736.75E-7480521No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010444Biological Processguard mother cell differentiation
GO:0050826Biological Processresponse to freezing
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MASHSNPDLW MGAASSDIRI SSNSGLELEG DSSWKAPKSS RNTSNMDVAK QVVQDTMRAA  60
SFCKGVLDEE WYTPETSLME LSSYSSPYGA QDARSNFSLL DSSLNYDNGN LMANFRPAPS  120
STLGIGQLES NRILSDLACT GQCSSVGLLS SISPGRHLRR STTTDSLGSG LPTSFSQGAV  180
IPSGSLSNIT SRNTNTESTN FPPSFSDAYN APALDLDKTG KECAGDIRDK LEPYQTNKRM  240
ESYPPRQQAF SQKRAASPRS MGGGTVSPTS KSPPRVVTST SNDSSVDIRD EDSPHVQNFR  300
GAELHSGSDD PNDIGIDGDD HNGKDDDDLD ESGDGSGGPY EVEEGAGNGT QNNGKSKAKG  360
KRGLPAKNLM AERRRRQKLN DRLYMLRSVV PKITKMDRAS ILGDAIEYLK ELLQRINDIH  420
NELEEAKLEQ SRSMPSSPTP RSTHHGYPTA VKEECPVLPN PESQPPRVEV RKREGQALNI  480
HMFCARRPGL LLSTVRALDA LGLDVQQAVI SCFNGFALDL FRAEAKDVDV GPEEIKAVLL  540
LTAEYGMHSL Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-15362429377Transcription factor MYC2
5gnj_B5e-15362429377Transcription factor MYC2
5gnj_E5e-15362429377Transcription factor MYC2
5gnj_F5e-15362429377Transcription factor MYC2
5gnj_G5e-15362429377Transcription factor MYC2
5gnj_I5e-15362429377Transcription factor MYC2
5gnj_M5e-15362429377Transcription factor MYC2
5gnj_N5e-15362429377Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396261.10.0uncharacterized protein LOC112292197 isoform X1
TrEMBLA0A2K1L9100.0A0A2K1L910_PHYPA; Uncharacterized protein
STRINGPP1S257_22V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.12e-77bHLH family protein