PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 721aa MW: 77760 Da PI: 6.8671

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_19660V3.10.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.7	2.7e-08	611	659	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E lv++v++ Ggg W+ I + Rt+ ++k++w+++l Pp3c1_19660V3.10.p 611 PWTLREVMTLVEGVARCGGGKWADIKKLAFsnvGYRTAVDLKDKWRNLL 659 8************************98888889**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.135	604	663	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-12	605	661	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-7	608	661	IPR001005	SANT/Myb domain
CDD	cd11660	2.23E-20	610	660	No hit	No description
SuperFamily	SSF46689	1.5E-15	610	663	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-6	611	659	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0031627	Biological Process	telomeric loop formation
GO:0046686	Biological Process	response to cadmium ion
GO:0000783	Cellular Component	nuclear telomere cap complex
GO:0003691	Molecular Function	double-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MLEATEDGSD SRLASSGREE SPAATSKPNV DDRLVYKLVK VGDDGSVLPA TEDEVFQSLV 60 SGSGNGLSSF DADESGDGED DEEDEEEDDE RTEYDTDDEP DERARNIPFQ DLAAQRQKLR 120 ARLQVLDSML LQVDAAEQER MAAERDASEN DLGHKDIFSP YFSAADGSGD KRQRRPNPKY 180 FGFEAGEDGA SGQPALSSSS GEPILTPTKE AAVSPRVTSG WGSHRSSVRS ASTHRARSAV 240 TQKPFTRTGT KVVSPVSLAS GIRSAAHEEV SLENLSIREL HEAFRATYGR DTSVKDKHWL 300 KRQISAGWMG QREAAFKPQP PVSSKLKIRL EEDDHAEQPL PSVGLTSVGA VERDAANEAK 360 TGAESLKDSA WNSLEGKGSQ HGMTTSAIVS TGGRFDVFNT GSLNSSDAAR GQIALYGEVV 420 NAGEPVGGKR QRKPNRRYIE DETEGSPGFI PTNDNRSLYG ESGGNGMDSS ANFTWRTVET 480 DGPADMIGRH GTLRGPTIRN ASNKNVSAAQ RPKIVGGIAK RKLEGRASTL VKMADPARPT 540 RQDTEGKVRK DGLSESNGGA GDRVSVLMPI VPFDPSAILQ PLPLDSRPEN DLPIATVPTA 600 NGGTRRKHHR PWTLREVMTL VEGVARCGGG KWADIKKLAF SNVGYRTAVD LKDKWRNLLR 660 ASRAQLHPAK QGERKKQFTA AIPAPILARV RELAALQNQI SPTAGTGSST IRSGRTVHRK 720 *

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MLEATEDGSD SRLASSGREE SPAATSKPNV DDRLVYKLVK VGDDGSVLPA TEDEVFQSLV  60
SGSGNGLSSF DADESGDGED DEEDEEEDDE RTEYDTDDEP DERARNIPFQ DLAAQRQKLR  120
ARLQVLDSML LQVDAAEQER MAAERDASEN DLGHKDIFSP YFSAADGSGD KRQRRPNPKY  180
FGFEAGEDGA SGQPALSSSS GEPILTPTKE AAVSPRVTSG WGSHRSSVRS ASTHRARSAV  240
TQKPFTRTGT KVVSPVSLAS GIRSAAHEEV SLENLSIREL HEAFRATYGR DTSVKDKHWL  300
KRQISAGWMG QREAAFKPQP PVSSKLKIRL EEDDHAEQPL PSVGLTSVGA VERDAANEAK  360
TGAESLKDSA WNSLEGKGSQ HGMTTSAIVS TGGRFDVFNT GSLNSSDAAR GQIALYGEVV  420
NAGEPVGGKR QRKPNRRYIE DETEGSPGFI PTNDNRSLYG ESGGNGMDSS ANFTWRTVET  480
DGPADMIGRH GTLRGPTIRN ASNKNVSAAQ RPKIVGGIAK RKLEGRASTL VKMADPARPT  540
RQDTEGKVRK DGLSESNGGA GDRVSVLMPI VPFDPSAILQ PLPLDSRPEN DLPIATVPTA  600
NGGTRRKHHR PWTLREVMTL VEGVARCGGG KWADIKKLAF SNVGYRTAVD LKDKWRNLLR  660
ASRAQLHPAK QGERKKQFTA AIPAPILARV RELAALQNQI SPTAGTGSST IRSGRTVHRK  720
*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.4846	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024366866.1	0.0	uncharacterized protein LOC112278048 isoform X1
Refseq	XP_024366994.1	0.0	uncharacterized protein LOC112278048 isoform X1
Refseq	XP_024367079.1	0.0	uncharacterized protein LOC112278048 isoform X1
Refseq	XP_024367147.1	0.0	uncharacterized protein LOC112278048 isoform X1
TrEMBL	A9S2J5	0.0	A9S2J5_PHYPA; Predicted protein
STRING	PP1S43_165V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1645	15	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	3e-41	TRF-like 6

Link Out ? help Back to Top
Phytozome	Pp3c1_19660V3.10.p
Entrez Gene	5923705

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]