PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_16920V3.5.p | ||||||||
Common Name | PHYPADRAFT_163971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 771aa MW: 80090 Da PI: 9.9461 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.3e-05 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pp3c1_16920V3.5.p 86 FVCEICNKGFQRDQNLQLHRRGH 108 89******************988 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00061 | 162 | 184 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pp3c1_16920V3.5.p 162 WKCDKCSKRYAVQSDWKAHSKTC 184 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.99E-7 | 85 | 108 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 85 | 108 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 127 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.1E-4 | 150 | 183 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.99E-7 | 157 | 182 | No hit | No description |
SMART | SM00355 | 140 | 162 | 182 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 771 aa Download sequence Send to blast |
MTLSNLTSAS AGEASVSSGN RTDGTNTGML PTSSTPATPT VTTVTVSSGQ PLAVAVKRKR 60 NLPGTPDPEA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK 120 EVRKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH 180 SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEDSARV SAGKQGGGQP DSLLGSGSSS 240 MSVIGAPSSP HVNNVGRMNG EPLASMVPLA SRPGGMPQSM VGLSDLGESC HPLLPRWGAT 300 SGSGPASKTG TGLSLWLGPG PGPGNQQQMH QLLPGSDGNS SFLMQAHKGM QGGAGLPGMM 360 NTLDYEMPQA PRHSSGHLPL TPSGSLFAHL LASGNGQGLQ ASSSSQSGAT TGMDISGFSD 420 FSAAGANRID SGSATAGLSS TSSAGMASNA SSRSTNGGGN LSSVSPLFNP QHQQQQHTAS 480 AQMSATALLQ KAAQMGATAS NTSLFRGFGQ GGTDSDSMGI WQGQRQEQQP QQQHLAQQQS 540 QSQSQPQQHQ HQQQGRTGDL PLNNMSNMGN QPLMRRPGDL QSVSQGLGGS SLGQTNNFGG 600 VQGRLSESST NVQDFMNSLS GGAGMFGGPF GSMPSMFGPS STNMGGMLPP STHRMSPSDV 660 LAGSTFPGGG QGVFQGMSSS SSLLPGLGGS SRVENDSSDR FTRDFLGVGG ASGITAAGGG 720 MGRTLSPRDL ARITSLGPGV DLGVFFNQRE NLRSVNASGH SPGKSWDPST * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 158 | 222 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 158 | 222 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.13110 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390101.1 | 0.0 | zinc finger protein MAGPIE-like isoform X1 | ||||
TrEMBL | A0A2K1L8H7 | 0.0 | A0A2K1L8H7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S63_51V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-112 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_16920V3.5.p |
Entrez Gene | 5926994 |
Publications ? help Back to Top | |||
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