PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_16920V3.2.p
Common NamePHYPADRAFT_163971
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 650aa    MW: 68080.4 Da    PI: 9.9718
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_16920V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-0583105123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C+k F r  nL+ H r H
  Pp3c1_16920V3.2.p  83 FVCEICNKGFQRDQNLQLHRRGH 105
                        89*******************88 PP
2zf-C2H212.30.0005159181123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H +t+
  Pp3c1_16920V3.2.p 159 WKCDKCSKRYAVQSDWKAHSKTC 181
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.43E-782105No hitNo description
SMARTSM003550.01783105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94983105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355220124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-4147180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.43E-7154179No hitNo description
SMARTSM00355140159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MTLSNLTSAS AGEASVSSGN RTDGTNTGML PTSSTPATPT VTTVTVSSGQ PLAVAVKRKR  60
NLPDPEAEVI ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTSKEVR  120
KRVYICPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV QSDWKAHSKT  180
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEDSARVSAG KQGGGQPDSL LGSGLPGMMN  240
TLDYEMPQAP RHSSGHLPLT PSGSLFAHLL ASGNGQGLQA SSSSQSGATT GMDISGFSDF  300
SAAGANRIDS GSATAGLSST SSAGMASNAS SRSTNGGGNL SSVSPLFNPQ HQQQQHTASA  360
QMSATALLQK AAQMGATASN TSLFRGFGQG GTDSDSMGIW QGQRQEQQPQ QQHLAQQQSQ  420
SQSQPQQHQH QQQGRTGDLP LNNMSNMGNQ PLMRRPGDLQ SVSQGLGGSS LGQTNNFGGV  480
QGRLSESSTN VQDFMNSLSG GAGMFGGPFG SMPSMFGPSS TNMGGMLPPS THRMSPSDVL  540
AGSTFPGGGQ GVFQGMSSSS SLLPGLGGSS RVENDSSDRF TRDFLGVGGA SGITAAGGGM  600
GRTLSPRDLA RITSLGPGVD LGVFFNQREN LRSVNASGHS PGKSWDPST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35155219367Zinc finger protein JACKDAW
5b3h_F7e-35155219367Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.131100.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390136.10.0protein indeterminate-domain 2-like isoform X5
SwissprotQ9LVQ71e-115IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2K1L8H70.0A0A2K1L8H7_PHYPA; Uncharacterized protein
TrEMBLA9SBK60.0A9SBK6_PHYPA; Predicted protein
STRINGPP1S63_51V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]