PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_16920V3.1.p
Common NamePHYPADRAFT_163971
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 771aa    MW: 80090 Da    PI: 9.9461
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_16920V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-0586108123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C+k F r  nL+ H r H
  Pp3c1_16920V3.1.p  86 FVCEICNKGFQRDQNLQLHRRGH 108
                        89******************988 PP
2zf-C2H212.10.00061162184123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H +t+
  Pp3c1_16920V3.1.p 162 WKCDKCSKRYAVQSDWKAHSKTC 184
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.99E-785108No hitNo description
Gene3DG3DSA:3.30.160.602.7E-585108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94986108IPR007087Zinc finger, C2H2
SMARTSM003550.01786108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SMARTSM00355220127157IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-4150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.99E-7157182No hitNo description
SMARTSM00355140162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MTLSNLTSAS AGEASVSSGN RTDGTNTGML PTSSTPATPT VTTVTVSSGQ PLAVAVKRKR  60
NLPGTPDPEA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK  120
EVRKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEDSARV SAGKQGGGQP DSLLGSGSSS  240
MSVIGAPSSP HVNNVGRMNG EPLASMVPLA SRPGGMPQSM VGLSDLGESC HPLLPRWGAT  300
SGSGPASKTG TGLSLWLGPG PGPGNQQQMH QLLPGSDGNS SFLMQAHKGM QGGAGLPGMM  360
NTLDYEMPQA PRHSSGHLPL TPSGSLFAHL LASGNGQGLQ ASSSSQSGAT TGMDISGFSD  420
FSAAGANRID SGSATAGLSS TSSAGMASNA SSRSTNGGGN LSSVSPLFNP QHQQQQHTAS  480
AQMSATALLQ KAAQMGATAS NTSLFRGFGQ GGTDSDSMGI WQGQRQEQQP QQQHLAQQQS  540
QSQSQPQQHQ HQQQGRTGDL PLNNMSNMGN QPLMRRPGDL QSVSQGLGGS SLGQTNNFGG  600
VQGRLSESST NVQDFMNSLS GGAGMFGGPF GSMPSMFGPS STNMGGMLPP STHRMSPSDV  660
LAGSTFPGGG QGVFQGMSSS SSLLPGLGGS SRVENDSSDR FTRDFLGVGG ASGITAAGGG  720
MGRTLSPRDL ARITSLGPGV DLGVFFNQRE NLRSVNASGH SPGKSWDPST *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35158222367Zinc finger protein JACKDAW
5b3h_F2e-35158222367Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.131100.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390101.10.0zinc finger protein MAGPIE-like isoform X1
TrEMBLA0A2K1L8H70.0A0A2K1L8H7_PHYPA; Uncharacterized protein
STRINGPP1S63_51V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]