PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_16700V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family RAV
Protein Properties Length: 973aa    MW: 105946 Da    PI: 6.8222
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_16700V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15.2e-14257305155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV    ++grW A+I++      ++r++lg+f t+eeAa+a+++a+ k++g
  Pp3c1_16700V3.4.p 257 SQFRGVV-PQSNGRWGAQIYEK-----HQRIWLGTFNTEEEAARAYDRAAIKFRG 305
                        6899996.6779*********3.....5************************998 PP
2B398.83.4e-31422522199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+ tpsdv+k++rlv+pk++ae++        +++ ++tl++ed sg+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+  +
  Pp3c1_16700V3.4.p 422 FDKAVTPSDVGKLNRLVIPKQHAERCfpldlsA-NSP-GQTLSFEDVSGKHWRFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDIVSFE--R 509
                        89***************************9853.433.459************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                          ++el++ ++rk
  Pp3c1_16700V3.4.p 510 GPSQELYIDFRRK 522
                        499999**99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.51E-26257315No hitNo description
SuperFamilySSF541717.85E-18257313IPR016177DNA-binding domain
PROSITE profilePS5103220.336258313IPR001471AP2/ERF domain
SMARTSM003801.5E-30258319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-21258313IPR001471AP2/ERF domain
PfamPF008472.1E-8259305IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-40417522IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-30418522IPR015300DNA-binding pseudobarrel domain
CDDcd100175.32E-26420521No hitNo description
PfamPF023621.4E-27422522IPR003340B3 DNA binding domain
SMARTSM010193.2E-26422523IPR003340B3 DNA binding domain
PROSITE profilePS5086315.439422523IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MCLNAKDEKA VGMWSKPASR LSSEPHHGPD VTLRLNNFDS AASSSDSDVS SSKIIEGPSE  60
VGKDASPVAV VRNISPASPV PGFRFVEEKT ATLDIAETAA ATAFRVNGAP RFLRYGDHDM  120
SRSHDSMHNS SGKENESFLR VAVEEHRAYP TSNLSDFEER SHPLNLLGSR LEAEYTRGAD  180
LKQWPSGSWD VGRRSGSGGL ERTHMGPNGF SGSGTWDVGQ MGSLEPTHSG PSLSGSSDSD  240
YGDDRVREQS NSKLPSSQFR GVVPQSNGRW GAQIYEKHQR IWLGTFNTEE EAARAYDRAA  300
IKFRGRDAMT NFRPVTDSDY ESEFLRSHSK EQIVEMLRRH TYDEELDQCK KVFNMDVAAN  360
AVRARRRALE MCRTSAPETG LSVGSFSLGP NASAGDTSMC LPPTSLPRNT LKECAPTREH  420
LFDKAVTPSD VGKLNRLVIP KQHAERCFPL DLSANSPGQT LSFEDVSGKH WRFRYSYWNS  480
SQSYVLTKGW SRFVKEKKLD AGDIVSFERG PSQELYIDFR RKQVIPGGTS ASDRPTFRSA  540
WTASCNNSYA PSKGPSSPFN PSMWQPFNFS APQVPGISSN LQQSMEKTLL YGGIYSQMME  600
SAVGVSVGSG NPGRTQDSGL PDMAASNFNP GLQSLPLKSY AATEDFIAGI ERPQRQLKDV  660
DGGPNIHDRS LVASSSSTSS QSEEAPSTSS GTRLFGVDLE LAGPFALKGS HLQSIPNLTS  720
GALPSMLLDG NASSPGNGTS MKNGSNLLLS SSLSSLPSGE FISFRFGNQQ QLSAFKSLPY  780
KGSEEQPPPE YEGVPVRTRL HASTSSSSGH EGTSPFKSTA KSDGEDPKAR SSTESVVSAL  840
DSNSSRSSHI VLEKRKRETS RNQEYLHGCS DQAGGTTVAA FNQAHSEFQG LQEQARHSWH  900
HQHEDSTSAE VRTDVKRHCS PIQAPLLRQG SGTTEQSDFL PKSEVLQEQR KPQHNLSNEG  960
DEGKNGREAS DR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-504185224113B3 domain-containing transcription factor NGA1
5os9_B4e-504185224113B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383909.10.0uncharacterized protein LOC112286345
RefseqXP_024383918.10.0uncharacterized protein LOC112286345
TrEMBLA0A2K1L8G90.0A0A2K1L8G9_PHYPA; Uncharacterized protein
STRINGPP1S63_80V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.15e-80related to ABI3/VP1 1