PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c1_16700V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 973aa MW: 105946 Da PI: 6.8222 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.1 | 5.2e-14 | 257 | 305 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV ++grW A+I++ ++r++lg+f t+eeAa+a+++a+ k++g Pp3c1_16700V3.2.p 257 SQFRGVV-PQSNGRWGAQIYEK-----HQRIWLGTFNTEEEAARAYDRAAIKFRG 305 6899996.6779*********3.....5************************998 PP | |||||||
2 | B3 | 98.8 | 3.4e-31 | 422 | 522 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+ tpsdv+k++rlv+pk++ae++ +++ ++tl++ed sg+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+ + Pp3c1_16700V3.2.p 422 FDKAVTPSDVGKLNRLVIPKQHAERCfpldlsA-NSP-GQTLSFEDVSGKHWRFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDIVSFE--R 509 89***************************9853.433.459************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++el++ ++rk Pp3c1_16700V3.2.p 510 GPSQELYIDFRRK 522 499999**99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.51E-26 | 257 | 315 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-18 | 257 | 313 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.336 | 258 | 313 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-30 | 258 | 319 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-21 | 258 | 313 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-8 | 259 | 305 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-40 | 417 | 522 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.03E-30 | 418 | 522 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.32E-26 | 420 | 521 | No hit | No description |
Pfam | PF02362 | 1.4E-27 | 422 | 522 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-26 | 422 | 523 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.439 | 422 | 523 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 973 aa Download sequence Send to blast |
MCLNAKDEKA VGMWSKPASR LSSEPHHGPD VTLRLNNFDS AASSSDSDVS SSKIIEGPSE 60 VGKDASPVAV VRNISPASPV PGFRFVEEKT ATLDIAETAA ATAFRVNGAP RFLRYGDHDM 120 SRSHDSMHNS SGKENESFLR VAVEEHRAYP TSNLSDFEER SHPLNLLGSR LEAEYTRGAD 180 LKQWPSGSWD VGRRSGSGGL ERTHMGPNGF SGSGTWDVGQ MGSLEPTHSG PSLSGSSDSD 240 YGDDRVREQS NSKLPSSQFR GVVPQSNGRW GAQIYEKHQR IWLGTFNTEE EAARAYDRAA 300 IKFRGRDAMT NFRPVTDSDY ESEFLRSHSK EQIVEMLRRH TYDEELDQCK KVFNMDVAAN 360 AVRARRRALE MCRTSAPETG LSVGSFSLGP NASAGDTSMC LPPTSLPRNT LKECAPTREH 420 LFDKAVTPSD VGKLNRLVIP KQHAERCFPL DLSANSPGQT LSFEDVSGKH WRFRYSYWNS 480 SQSYVLTKGW SRFVKEKKLD AGDIVSFERG PSQELYIDFR RKQVIPGGTS ASDRPTFRSA 540 WTASCNNSYA PSKGPSSPFN PSMWQPFNFS APQVPGISSN LQQSMEKTLL YGGIYSQMME 600 SAVGVSVGSG NPGRTQDSGL PDMAASNFNP GLQSLPLKSY AATEDFIAGI ERPQRQLKDV 660 DGGPNIHDRS LVASSSSTSS QSEEAPSTSS GTRLFGVDLE LAGPFALKGS HLQSIPNLTS 720 GALPSMLLDG NASSPGNGTS MKNGSNLLLS SSLSSLPSGE FISFRFGNQQ QLSAFKSLPY 780 KGSEEQPPPE YEGVPVRTRL HASTSSSSGH EGTSPFKSTA KSDGEDPKAR SSTESVVSAL 840 DSNSSRSSHI VLEKRKRETS RNQEYLHGCS DQAGGTTVAA FNQAHSEFQG LQEQARHSWH 900 HQHEDSTSAE VRTDVKRHCS PIQAPLLRQG SGTTEQSDFL PKSEVLQEQR KPQHNLSNEG 960 DEGKNGREAS DR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-50 | 418 | 522 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-50 | 418 | 522 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024383909.1 | 0.0 | uncharacterized protein LOC112286345 | ||||
Refseq | XP_024383918.1 | 0.0 | uncharacterized protein LOC112286345 | ||||
TrEMBL | A0A2K1L8G9 | 0.0 | A0A2K1L8G9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S63_80V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13260.1 | 5e-80 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c1_16700V3.2.p |