PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_15410V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 639aa MW: 70361.3 Da PI: 7.7806 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.5 | 2.7e-14 | 42 | 128 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 lt sdv++ ++ +p++f e++g + +++ +++ +g++W+v++ + + +++GW++Fv +n Lk gD v+F l+++++f v v Pp3c1_15410V3.4.p 42 LTASDVSS-NWTPVPREFSESYGDDLRGP--VSFHGANGKVWSVEV--GGPAKFLGFKGGWRSFVADNSLKRGDQVLFLLVSTKTF--SVYV 126 44555555.57999********9887776..***************..88888899***********************9998888..8877 PP E- CS B3 97 fr 98 f+ Pp3c1_15410V3.4.p 127 FN 128 76 PP | |||||||
2 | B3 | 60.4 | 3.1e-19 | 294 | 384 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 v++ps+v + +l++p kf ++h + + ++l+d +g +W+ k++ ++ ++GW F ++++L+egD++vF+++++++ + +v+ Pp3c1_15410V3.4.p 294 VMMPSHVYRGFWLTIPGKFSKAHLPN--DRINIKLQDIHGFQWSASW--IKSDHHTGVSGGWAAFSRDHRLEEGDVCVFEVIDSEDWTILVH 381 799********************533..5578***************..999999999***********************9999999**** PP EE- CS B3 96 vfr 98 +fr Pp3c1_15410V3.4.p 382 IFR 384 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.83 | 37 | 130 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.35E-14 | 38 | 128 | No hit | No description |
SMART | SM01019 | 1.0E-10 | 39 | 130 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.04E-20 | 40 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-19 | 41 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.1E-12 | 42 | 128 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-21 | 286 | 384 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-24 | 289 | 387 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.943 | 291 | 386 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-15 | 291 | 386 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.0E-18 | 294 | 384 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.96E-23 | 294 | 384 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 639 aa Download sequence Send to blast |
MSEAMDSAFR ACVPCTHSCY NKHRNIAAES TTPFTRPPCF LLTASDVSSN WTPVPREFSE 60 SYGDDLRGPV SFHGANGKVW SVEVGGPAKF LGFKGGWRSF VADNSLKRGD QVLFLLVSTK 120 TFSVYVFNKL GVETIPSPCV TPMRAAPMSG KRKREDVNDE AGMNVRVKDE AEDLDAESSD 180 ISEYEASDTD SSSESEDTEA SPQHSGGKVY NDEVCFPVKM KVRRKCTAKV SRVNAHPTKK 240 SVGGSAGKDG MMYEAGSCSR TYESLRRKVT LAERERALVA ANAFVTEGPS CPVVMMPSHV 300 YRGFWLTIPG KFSKAHLPND RINIKLQDIH GFQWSASWIK SDHHTGVSGG WAAFSRDHRL 360 EEGDVCVFEV IDSEDWTILV HIFRVVDVDL APGSRGGWDK NYRIIQPKIH YHPKTREKHL 420 TKKTSSGTAK RNLTGASYST PSRRQMSKRY KKAPNPEQSD AEDDEDALLS TLCKGNSAAV 480 SDVEDVKPKI LSMGPIPQIV KVKQEPNLPA MCNVKQEYGM CSEDMKPTAE KLKASLNLSQ 540 PPRDPICEIV KNAGVPAVAK SESGATEPSL NNDARTWYAV VRLLNKRQNE ETSELELLVT 600 IRACPRTAES SGVSTDGNGN WWVPRSHFSP DMASCYIG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-17 | 262 | 385 | 17 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-17 | 262 | 385 | 17 | 142 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.17736 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384027.1 | 0.0 | B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_024384107.1 | 0.0 | B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_024384185.1 | 0.0 | B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_024384260.1 | 0.0 | B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_024384342.1 | 0.0 | B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_024384433.1 | 0.0 | B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_024384516.1 | 0.0 | B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A2K1L8C8 | 0.0 | A0A2K1L8C8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S63_211V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_15410V3.4.p |