PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_5900V3.2.p
Common NamePHYPADRAFT_171626
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 559aa    MW: 61339.2 Da    PI: 8.1072
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_5900V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013262286123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++C+   C+k+F+++ ++k H +tH
  Pp3c19_5900V3.2.p 262 FRCQydGCNKTFKNPQTMKMHHKTH 286
                        89**********************9 PP
2zf-C2H215.16.6e-05317339223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +Cp+C+k+F   ++L+rH  + H
  Pp3c19_5900V3.2.p 317 RCPKCKKTFVGLYELRRHYGRkH 339
                        7*****************86666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.52E-7258288No hitNo description
Gene3DG3DSA:3.30.160.601.3E-8260289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.637262291IPR007087Zinc finger, C2H2
SMARTSM003557.9E-4262286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280264286IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-7316366No hitNo description
SMARTSM003550.12316339IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473316345IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-4317351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280318339IPR007087Zinc finger, C2H2
SMARTSM00355180346366IPR015880Zinc finger, C2H2-like
SMARTSM00355210372393IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MTAAAPPALP NPYNADVSGS FQAPSFSINP GFIMNDALAS ALGMGGGPFY HFADNPHLGI  60
PWPEYVYGST PTSILGIANS LSPTLSFSDS SVYSTDESDL LSDEFLKQMN GCTPVPSSMS  120
SPVLSPVPSP VTMHPNLVST LKNMVAPGVT TYNAQPSVIA YLEQLTRGEV QDRMEKHRQQ  180
DHQKQMFDHT DARSAYLRHT PQLVVAPKVE VQDLPENVGG LYSSPSVADD PAKVKAVEKS  240
ETDDNIEAAV VSVDLIKNRR PFRCQYDGCN KTFKNPQTMK MHHKTHWSEG GAGGKGCSLP  300
TLTSSLKAGH NKKIPSRCPK CKKTFVGLYE LRRHYGRKHS EGEKPFGCRK CGKKFYIEVD  360
VRDHEKLCGE PIECKCGLKF AFKCNLVAHK KAHPACQDNP PSNSHSTATT YQSSTTSDDT  420
ERSLANPGQA RTGYKRARED FVGPMQSSMH IPLPEFKEIL EAPDFKMARH EYRGLSFLTE  480
TGSPWAADIN YPAVSFNSIS GVGLHSGLSN LGSQEFQQNH QQFSSKLYRQ PIPATFNKAV  540
NCEMGMALNQ HQFKTWSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356411.10.0zinc finger protein 850-like
TrEMBLA9TS780.0A9TS78_PHYPA; Predicted protein
STRINGPP1S303_40V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.13e-14WIP domain protein 5
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]