PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_5620V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TALE
Protein Properties Length: 293aa    MW: 34636.3 Da    PI: 7.2481
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_5620V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.9e-07158206954
                        HHHHHHHHHHHHH...SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox   9 keqleeLeelFek...nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        ++  ++L++ F +    +yps+ e++ L + +gL+ +q+ +WF N R +
  Pp3c19_5620V3.1.p 158 TNARQILKDWFSRhsyWPYPSEMEKAYLQRLCGLNLKQINNWFINERKR 206
                        6778999999997334589****************************88 PP
2ELK29.22e-10127148122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK++L+ KY+ ++ +Lk+EF+
  Pp3c19_5620V3.1.p 127 ELKKMLRLKYGKHIAGLKAEFN 148
                        9********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012563.5E-101970IPR005541KNOX2
PfamPF037912.7E-172369IPR005541KNOX2
SMARTSM011880.0046127148IPR005539ELK domain
PROSITE profilePS512139.132127147IPR005539ELK domain
PROSITE profilePS5007111.37147210IPR001356Homeobox domain
SMARTSM003893.9E-8149214IPR001356Homeobox domain
SuperFamilySSF466897.27E-17151218IPR009057Homeodomain-like
CDDcd000863.32E-10151208No hitNo description
Gene3DG3DSA:1.10.10.604.5E-24152209IPR009057Homeodomain-like
PfamPF059208.4E-15167206IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEKKFQRFQY GESSWNVLHV TKFGQDPSLD FFMRSYIDLL TKFREDLENP YNKFAQYKDK  60
VTKDLEDLCG HYIETTPDEE DNFGSDIGTK DMSQDLNDLE ILGEENLMYT ADIDESIVID  120
PDAADEELKK MLRLKYGKHI AGLKAEFNRV RKKGKLPTNA RQILKDWFSR HSYWPYPSEM  180
EKAYLQRLCG LNLKQINNWF INERKRHWSC EGKCMYPNTK FYPRDGHVDP NNHALLPETA  240
FACTSAQYPR RRSSTRIMTF CQVIESKELY LQQKHLHQLQ VKNITSYWLL PN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2667461e-174AB266746.1 Physcomitrella patens MKN4 gene for knotted-like homeobox transcription factor MKN4, partial cds.
GenBankAF2848171e-174AF284817.1 Physcomitrella patens class 1 KNOTTED1-like protein MKN4 (MKN4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1IXA80.0A0A2K1IXA8_PHYPA; Uncharacterized protein
STRINGPP1S235_27V6.11e-107(Physcomitrella patens)
STRINGPP1S33_357V6.11e-107(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.13e-36KNOTTED-like from Arabidopsis thaliana 2